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BioLiP
Download all results in tab-seperated text for 49 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8s8e:A (3.85) BS01 rna N/A N/A Q6CN12 39193907
    2 8s8e:B (3.85) BS01 rna N/A N/A Q6CWD0 39193907
    3 8s8e:C (3.85) BS01 rna N/A N/A Q6CKL3 39193907
    4 8s8e:C (3.85) BS02 rna N/A N/A Q6CKL3 39193907
    5 8s8e:D (3.85) BS01 rna N/A N/A Q6CRK7 39193907
    6 8s8e:D (3.85) BS02 rna N/A N/A Q6CRK7 39193907
    7 8s8e:E (3.85) BS01 rna N/A N/A Q6CWJ2 39193907
    8 8s8e:F (3.85) BS01 rna N/A N/A Q6CRA3 39193907
    9 8s8e:F (3.85) BS02 rna N/A N/A Q6CRA3 39193907
    10 8s8e:G (3.85) BS01 rna N/A N/A Q6CM04 39193907
    11 8s8e:H (3.85) BS01 rna N/A N/A Q6CTD6 39193907
    12 8s8e:I (3.85) BS01 rna N/A N/A Q6CMG3 39193907
    13 8s8e:J (3.85) BS01 rna N/A N/A Q6CM18 39193907
    14 8s8e:K (3.85) BS01 rna N/A N/A Q6CVZ5 39193907
    15 8s8e:L (3.85) BS01 rna N/A N/A Q6CX80 39193907
    16 8s8e:M (3.85) BS01 rna N/A N/A Q6CLU4 39193907
    17 8s8e:N (3.85) BS01 rna N/A N/A Q6CJK0 39193907
    18 8s8e:O (3.85) BS01 rna N/A N/A P27069 39193907
    19 8s8e:P (3.85) BS01 rna N/A N/A Q6CKV4 39193907
    20 8s8e:Q (3.85) BS01 rna N/A N/A Q875N2 39193907
    21 8s8e:R (3.85) BS01 rna N/A N/A Q6CWU3 39193907
    22 8s8e:S (3.85) BS01 rna N/A N/A Q6CWT9 39193907
    23 8s8e:T (3.85) BS01 rna N/A N/A Q6CXM0 39193907
    24 8s8e:U (3.85) BS01 rna N/A N/A Q6CIM1 39193907
    25 8s8e:V (3.85) BS01 rna N/A N/A Q6CXT6 39193907
    26 8s8e:W (3.85) BS01 rna N/A N/A Q6CW21 39193907
    27 8s8e:X (3.85) BS01 rna N/A N/A F2Z602 39193907
    28 8s8e:Y (3.85) BS01 rna N/A N/A Q6CU44 39193907
    29 8s8e:Z (3.85) BS01 rna N/A N/A Q6CW78 39193907
    30 8s8e:a (3.85) BS01 rna N/A N/A Q6CS01 39193907
    31 8s8e:a (3.85) BS02 rna N/A N/A Q6CS01 39193907
    32 8s8e:a (3.85) BS03 ZN N/A N/A Q6CS01 39193907
    33 8s8e:b (3.85) BS01 rna N/A N/A Q6CNL2 39193907
    34 8s8e:b (3.85) BS02 ZN N/A N/A Q6CNL2 39193907
    35 8s8e:c (3.85) BS01 rna N/A N/A P33285 39193907
    36 8s8e:c (3.85) BS02 rna N/A N/A P33285 39193907
    37 8s8e:d (3.85) BS01 rna N/A N/A Q6CPG3 39193907
    38 8s8e:e (3.85) BS01 rna N/A N/A Q6CUH5 39193907
    39 8s8e:f (3.85) BS01 rna N/A N/A P69061 39193907
    40 8s8e:f (3.85) BS02 ZN N/A N/A P69061 39193907
    41 8s8e:g (3.85) BS01 rna N/A N/A Q6CNI7 39193907
    42 8s8e:i (3.85) BS01 rna N/A N/A P38912 39193907
    43 8s8e:i (3.85) BS02 rna N/A N/A P38912 39193907
    44 8s8e:i (3.85) BS03 MG N/A N/A P38912 39193907
    45 8s8e:j (3.85) BS01 rna N/A N/A P20459 39193907
    46 8s8e:k (3.85) BS01 rna N/A N/A P32481 39193907
    47 8s8e:k (3.85) BS02 peptide N/A N/A P32481 39193907
    48 8s8e:k (3.85) BS03 MET N/A N/A P32481 39193907
    49 8s8e:p (3.85) BS01 rna N/A N/A P32497 39193907
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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