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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8rpy:0 (2.64) BS01 rna ? GO:0000027 ... P0A7N4 38730238
    2 8rpy:1 (2.64) BS01 rna ? GO:0000027 ... P0A7N9 38730238
    3 8rpy:2 (2.64) BS01 rna ? GO:0002181 ... P0A7P5 38730238
    4 8rpy:3 (2.64) BS01 rna ? GO:0002181 ... P0A7Q1 38730238
    5 8rpy:4 (2.64) BS01 rna ? GO:0002181 ... P0A7Q6 38730238
    6 8rpy:6 (2.64) BS01 rna ? GO:0002181 ... P0A7M9 38730238
    7 8rpy:C (2.64) BS01 rna ? GO:0000027 ... P60422 38730238
    8 8rpy:D (2.64) BS01 rna ? GO:0000027 ... P60438 38730238
    9 8rpy:E (2.64) BS01 rna ? GO:0001070 ... P60723 38730238
    10 8rpy:E (2.64) BS02 peptide ? GO:0001070 ... P60723 38730238
    11 8rpy:F (2.64) BS01 rna ? GO:0000027 ... P62399 38730238
    12 8rpy:F (2.64) BS02 rna ? GO:0000027 ... P62399 38730238
    13 8rpy:G (2.64) BS01 rna ? GO:0000027 ... P0AG55 38730238
    14 8rpy:H (2.64) BS01 rna ? GO:0002181 ... P0A7R1 38730238
    15 8rpy:J (2.64) BS01 rna ? GO:0002181 ... P0AA10 38730238
    16 8rpy:K (2.64) BS01 rna ? GO:0002181 ... P0ADY3 38730238
    17 8rpy:L (2.64) BS01 rna ? GO:0002181 ... P02413 38730238
    18 8rpy:M (2.64) BS01 rna ? GO:0000027 ... P0ADY7 38730238
    19 8rpy:M (2.64) BS02 rna ? GO:0000027 ... P0ADY7 38730238
    20 8rpy:N (2.64) BS01 rna ? GO:0000027 ... P0AG44 38730238
    21 8rpy:O (2.64) BS01 rna ? GO:0002181 ... P0C018 38730238
    22 8rpy:O (2.64) BS02 rna ? GO:0002181 ... P0C018 38730238
    23 8rpy:P (2.64) BS01 rna ? GO:0000027 ... P0A7K6 38730238
    24 8rpy:Q (2.64) BS01 rna ? GO:0000027 ... P0A7L3 38730238
    25 8rpy:R (2.64) BS01 rna ? GO:0002181 ... P0AG48 38730238
    26 8rpy:S (2.64) BS01 rna ? GO:0002181 ... P61175 38730238
    27 8rpy:T (2.64) BS01 rna ? GO:0000027 ... P0ADZ0 38730238
    28 8rpy:U (2.64) BS01 rna ? GO:0000027 ... P60624 38730238
    29 8rpy:V (2.64) BS01 rna ? GO:0000027 ... P68919 38730238
    30 8rpy:V (2.64) BS02 rna ? GO:0000027 ... P68919 38730238
    31 8rpy:W (2.64) BS01 rna ? N/A P0A7L8 38730238
    32 8rpy:W (2.64) BS02 rna ? N/A P0A7L8 38730238
    33 8rpy:X (2.64) BS01 rna ? GO:0000027 ... P0A7M2 38730238
    34 8rpy:Y (2.64) BS01 rna ? GO:0000027 ... P0A7M6 38730238
    35 8rpy:Z (2.64) BS01 rna ? GO:0000027 ... P0AG51 38730238
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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