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BioLiP
Download all results in tab-seperated text for 27 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8qxm:A (2.94) BS01 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    2 8qxm:A (2.94) BS02 MG 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    3 8qxm:A (2.94) BS03 DTP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    4 8qxm:A (2.94) BS04 GTP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    5 8qxm:A (2.94) BS05 GTP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    6 8qxm:A (2.94) BS06 DTP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    7 8qxm:A (2.94) BS07 DTP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    8 8qxm:B (2.94) BS01 GTP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    9 8qxm:B (2.94) BS02 GTP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    10 8qxm:B (2.94) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    11 8qxm:B (2.94) BS04 DCP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    12 8qxm:B (2.94) BS05 DTP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    13 8qxm:B (2.94) BS06 DTP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    14 8qxm:B (2.94) BS07 DTP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    15 8qxm:C (2.94) BS01 DTP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    16 8qxm:C (2.94) BS02 DTP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    17 8qxm:C (2.94) BS03 GTP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    18 8qxm:C (2.94) BS04 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    19 8qxm:C (2.94) BS05 MG 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    20 8qxm:C (2.94) BS06 GTP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    21 8qxm:D (2.94) BS01 DTP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    22 8qxm:D (2.94) BS02 GTP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    23 8qxm:D (2.94) BS03 DTP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    24 8qxm:D (2.94) BS04 GTP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    25 8qxm:D (2.94) BS05 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    26 8qxm:D (2.94) BS06 MG 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    27 8qxm:D (2.94) BS07 DCP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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