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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8qrl:0 (3.34) BS01 rna N/A GO:0003735 ... P82930 38969660
    2 8qrl:3 (3.34) BS01 rna N/A GO:0005515 ... Q9NWT8 38969660
    3 8qrl:8 (3.34) BS01 rna N/A GO:0005515 ... A6NJ78 38969660
    4 8qrl:8 (3.34) BS02 SAH N/A GO:0005515 ... A6NJ78 38969660
    5 8qrl:B (3.34) BS01 rna N/A GO:0003735 ... Q9Y399 38969660
    6 8qrl:B (3.34) BS02 MG N/A GO:0003735 ... Q9Y399 38969660
    7 8qrl:C (3.34) BS01 rna N/A GO:0003723 ... Q96EL2 38969660
    8 8qrl:D (3.34) BS01 rna N/A GO:0003723 ... P82675 38969660
    9 8qrl:E (3.34) BS01 rna N/A GO:0003735 ... P82932 38969660
    10 8qrl:E (3.34) BS02 FES N/A GO:0003735 ... P82932 38969660
    11 8qrl:F (3.34) BS01 rna N/A GO:0000028 ... Q9Y2R9 38969660
    12 8qrl:G (3.34) BS01 rna N/A GO:0003723 ... P82933 38969660
    13 8qrl:H (3.34) BS01 rna N/A GO:0003674 ... P82664 38969660
    14 8qrl:I (3.34) BS01 rna N/A GO:0003723 ... P82912 38969660
    15 8qrl:J (3.34) BS01 rna N/A GO:0003723 ... O15235 38969660
    16 8qrl:K (3.34) BS01 rna N/A GO:0003723 ... O60783 38969660
    17 8qrl:L (3.34) BS01 rna N/A GO:0003723 ... P82914 38969660
    18 8qrl:L (3.34) BS02 NAD N/A GO:0003723 ... P82914 38969660
    19 8qrl:M (3.34) BS01 rna N/A GO:0003735 ... Q9Y3D3 38969660
    20 8qrl:N (3.34) BS01 rna N/A GO:0003735 ... Q9Y2R5 38969660
    21 8qrl:O (3.34) BS01 rna N/A GO:0003735 ... Q9Y676 38969660
    22 8qrl:O (3.34) BS02 ZN N/A GO:0003735 ... Q9Y676 38969660
    23 8qrl:P (3.34) BS01 rna N/A GO:0003735 ... Q9Y3D5 38969660
    24 8qrl:P (3.34) BS02 FES N/A GO:0003735 ... Q9Y3D5 38969660
    25 8qrl:Q (3.34) BS01 rna N/A GO:0003723 ... P82921 38969660
    26 8qrl:S (3.34) BS01 rna N/A GO:0003723 ... Q9Y3D9 38969660
    27 8qrl:T (3.34) BS01 rna N/A GO:0003735 ... P82663 38969660
    28 8qrl:T (3.34) BS02 FES N/A GO:0003735 ... P82663 38969660
    29 8qrl:U (3.34) BS01 rna N/A GO:0003723 ... Q9BYN8 38969660
    30 8qrl:V (3.34) BS01 rna N/A GO:0000049 ... Q92552 38969660
    31 8qrl:X (3.34) BS01 rna N/A GO:0003723 ... P51398 38969660
    32 8qrl:X (3.34) BS02 ATP N/A GO:0003723 ... P51398 38969660
    33 8qrl:X (3.34) BS03 GDP N/A GO:0003723 ... P51398 38969660
    34 8qrl:Z (3.34) BS01 rna N/A GO:0003735 ... Q9Y291 38969660
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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