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BioLiP
Download all results in tab-seperated text for 72 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8qk7:6 (2.77) BS01 rna N/A N/A P07012 N/A
    2 8qk7:6 (2.77) BS02 rna N/A N/A P07012 N/A
    3 8qk7:6 (2.77) BS03 rna N/A N/A P07012 N/A
    4 8qk7:6 (2.77) BS04 rna N/A N/A P07012 N/A
    5 8qk7:B (2.77) BS01 rna N/A N/A P60422 N/A
    6 8qk7:B (2.77) BS02 rna N/A N/A P60422 N/A
    7 8qk7:C (2.77) BS01 rna N/A N/A P60438 N/A
    8 8qk7:D (2.77) BS01 rna N/A N/A P60723 N/A
    9 8qk7:E (2.77) BS01 rna N/A N/A P62399 N/A
    10 8qk7:E (2.77) BS02 rna N/A N/A P62399 N/A
    11 8qk7:E (2.77) BS03 rna N/A N/A P62399 N/A
    12 8qk7:F (2.77) BS01 rna N/A N/A P0AG55 N/A
    13 8qk7:G (2.77) BS01 rna N/A N/A P0A7R1 N/A
    14 8qk7:I (2.77) BS01 rna N/A N/A P0A7J7 N/A
    15 8qk7:J (2.77) BS01 rna N/A N/A P0AA10 N/A
    16 8qk7:K (2.77) BS01 rna N/A N/A P0ADY3 N/A
    17 8qk7:K (2.77) BS02 rna N/A N/A P0ADY3 N/A
    18 8qk7:L (2.77) BS01 rna N/A N/A P02413 N/A
    19 8qk7:M (2.77) BS01 rna N/A N/A P0ADY7 N/A
    20 8qk7:M (2.77) BS02 rna N/A N/A P0ADY7 N/A
    21 8qk7:N (2.77) BS01 rna N/A N/A P0AG44 N/A
    22 8qk7:O (2.77) BS01 rna N/A N/A P0C018 N/A
    23 8qk7:O (2.77) BS02 rna N/A N/A P0C018 N/A
    24 8qk7:P (2.77) BS01 rna N/A N/A P0A7K6 N/A
    25 8qk7:P (2.77) BS02 rna N/A N/A P0A7K6 N/A
    26 8qk7:Q (2.77) BS01 rna N/A N/A P0A7L3 N/A
    27 8qk7:R (2.77) BS01 rna N/A N/A P0AG48 N/A
    28 8qk7:S (2.77) BS01 rna N/A N/A P61175 N/A
    29 8qk7:T (2.77) BS01 rna N/A N/A P0ADZ0 N/A
    30 8qk7:U (2.77) BS01 rna N/A N/A P60624 N/A
    31 8qk7:V (2.77) BS01 rna N/A N/A P68919 N/A
    32 8qk7:W (2.77) BS01 rna N/A N/A P0A7L8 N/A
    33 8qk7:W (2.77) BS02 rna N/A N/A P0A7L8 N/A
    34 8qk7:X (2.77) BS01 rna N/A N/A P0A7M2 N/A
    35 8qk7:Y (2.77) BS01 rna N/A N/A P0A7M6 N/A
    36 8qk7:Z (2.77) BS01 rna N/A N/A P0AG51 N/A
    37 8qk7:Z (2.77) BS02 rna N/A N/A P0AG51 N/A
    38 8qk7:a (2.77) BS01 rna N/A N/A P0A7M9 N/A
    39 8qk7:a (2.77) BS02 ZN N/A N/A P0A7M9 N/A
    40 8qk7:b (2.77) BS01 rna N/A N/A P0A7N4 N/A
    41 8qk7:c (2.77) BS01 rna N/A N/A P0A7N9 N/A
    42 8qk7:d (2.77) BS01 rna N/A N/A P0A7P5 N/A
    43 8qk7:e (2.77) BS01 rna N/A N/A P0A7Q1 N/A
    44 8qk7:f (2.77) BS01 rna N/A N/A P0A7Q6 N/A
    45 8qk7:f (2.77) BS02 ZN N/A N/A P0A7Q6 N/A
    46 8qk7:g (2.77) BS01 rna N/A N/A P0A7V0 N/A
    47 8qk7:h (2.77) BS01 rna N/A N/A P0A7V3 N/A
    48 8qk7:h (2.77) BS02 rna N/A N/A P0A7V3 N/A
    49 8qk7:i (2.77) BS01 rna N/A N/A P0A7V8 N/A
    50 8qk7:j (2.77) BS01 rna N/A N/A P0A7W1 N/A
    51 8qk7:j (2.77) BS02 rna N/A N/A P0A7W1 N/A
    52 8qk7:k (2.77) BS01 rna N/A N/A P02358 N/A
    53 8qk7:l (2.77) BS01 rna N/A N/A P02359 N/A
    54 8qk7:l (2.77) BS02 rna N/A N/A P02359 N/A
    55 8qk7:m (2.77) BS01 rna N/A N/A P0A7W7 N/A
    56 8qk7:n (2.77) BS01 rna N/A N/A P0A7X3 N/A
    57 8qk7:n (2.77) BS02 rna N/A N/A P0A7X3 N/A
    58 8qk7:o (2.77) BS01 rna N/A N/A P0A7R5 N/A
    59 8qk7:p (2.77) BS01 rna N/A N/A P0A7R9 N/A
    60 8qk7:q (2.77) BS01 rna N/A N/A P0A7S3 N/A
    61 8qk7:r (2.77) BS01 rna N/A N/A P0A7S9 N/A
    62 8qk7:r (2.77) BS02 rna N/A N/A P0A7S9 N/A
    63 8qk7:s (2.77) BS01 rna N/A N/A P0AG59 N/A
    64 8qk7:t (2.77) BS01 rna N/A N/A P0ADZ4 N/A
    65 8qk7:t (2.77) BS02 rna N/A N/A P0ADZ4 N/A
    66 8qk7:u (2.77) BS01 rna N/A N/A P0A7T3 N/A
    67 8qk7:v (2.77) BS01 rna N/A N/A P0AG63 N/A
    68 8qk7:w (2.77) BS01 rna N/A N/A P0A7T7 N/A
    69 8qk7:x (2.77) BS01 rna N/A N/A P0A7U3 N/A
    70 8qk7:y (2.77) BS01 rna N/A N/A P0A7U7 N/A
    71 8qk7:z (2.77) BS01 rna N/A N/A P68679 N/A
    72 8qk7:z (2.77) BS02 rna N/A N/A P68679 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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