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BioLiP
Download all results in tab-seperated text for 28 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8opc:Aa (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    2 8opc:Ac (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    3 8opc:Ae (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    4 8opc:Ag (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    5 8opc:Ai (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    6 8opc:Ak (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    7 8opc:Am (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    8 8opc:Ao (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    9 8opc:Aq (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    10 8opc:As (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    11 8opc:Au (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    12 8opc:Aw (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    13 8opc:Ay (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    14 8opc:Ba (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    15 8opc:Bc (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    16 8opc:Be (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    17 8opc:Bg (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    18 8opc:Bi (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    19 8opc:Bk (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    20 8opc:Bm (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    21 8opc:Bo (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    22 8opc:Bq (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    23 8opc:Bs (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    24 8opc:Bu (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    25 8opc:Bw (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    26 8opc:By (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    27 8opc:Ca (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    28 8opc:Cc (2.99) BS01 rna ? GO:0019028 ... A0A0A7DIV0 38233506
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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