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BioLiP
Download all results in tab-seperated text for 41 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8jho:A (7.6) BS01 dna ? GO:0000786 ... P84233 37798513
    2 8jho:A (7.6) BS02 dna ? GO:0000786 ... P84233 37798513
    3 8jho:B (7.6) BS01 dna ? GO:0000786 ... P62799 37798513
    4 8jho:B (7.6) BS02 dna ? GO:0000786 ... P62799 37798513
    5 8jho:C (7.6) BS01 dna ? GO:0000786 ... P06897 37798513
    6 8jho:C (7.6) BS02 dna ? GO:0000786 ... P06897 37798513
    7 8jho:D (7.6) BS01 dna ? GO:0000786 ... P02281 37798513
    8 8jho:D (7.6) BS02 dna ? GO:0000786 ... P02281 37798513
    9 8jho:E (7.6) BS01 dna ? GO:0000786 ... P84233 37798513
    10 8jho:E (7.6) BS02 dna ? GO:0000786 ... P84233 37798513
    11 8jho:F (7.6) BS01 dna ? GO:0000786 ... P62799 37798513
    12 8jho:G (7.6) BS01 dna ? GO:0000786 ... P06897 37798513
    13 8jho:G (7.6) BS02 dna ? GO:0000786 ... P06897 37798513
    14 8jho:H (7.6) BS01 dna ? GO:0000786 ... P02281 37798513
    15 8jho:H (7.6) BS02 dna ? GO:0000786 ... P02281 37798513
    16 8jho:K (7.6) BS01 dna ? GO:0000086 ... P22579 37798513
    17 8jho:L (7.6) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 37798513
    18 8jho:M (7.6) BS01 dna ? GO:0000122 ... Q12432 37798513
    19 8jho:N (7.6) BS01 ZN ? GO:0000118 ... Q04779 37798513
    20 8jho:N (7.6) BS02 ZN ? GO:0000118 ... Q04779 37798513
    21 8jho:N (7.6) BS03 ZN ? GO:0000118 ... Q04779 37798513
    22 8jho:N (7.6) BS04 ZN ? GO:0000118 ... Q04779 37798513
    23 8jho:O (7.6) BS01 dna ? GO:0000122 ... Q12432 37798513
    24 8jho:P (7.6) BS01 ZN ? GO:0000118 ... Q04779 37798513
    25 8jho:P (7.6) BS02 ZN ? GO:0000118 ... Q04779 37798513
    26 8jho:a (7.6) BS01 dna ? GO:0000786 ... P84233 37798513
    27 8jho:a (7.6) BS02 dna ? GO:0000786 ... P84233 37798513
    28 8jho:b (7.6) BS01 dna ? GO:0000786 ... P62799 37798513
    29 8jho:b (7.6) BS02 dna ? GO:0000786 ... P62799 37798513
    30 8jho:c (7.6) BS01 dna ? GO:0000786 ... P06897 37798513
    31 8jho:c (7.6) BS02 dna ? GO:0000786 ... P06897 37798513
    32 8jho:d (7.6) BS01 dna ? GO:0000786 ... P02281 37798513
    33 8jho:d (7.6) BS02 dna ? GO:0000786 ... P02281 37798513
    34 8jho:e (7.6) BS01 dna ? GO:0000786 ... P84233 37798513
    35 8jho:e (7.6) BS02 dna ? GO:0000786 ... P84233 37798513
    36 8jho:f (7.6) BS01 dna ? GO:0000786 ... P62799 37798513
    37 8jho:f (7.6) BS02 dna ? GO:0000786 ... P62799 37798513
    38 8jho:g (7.6) BS01 dna ? GO:0000786 ... P06897 37798513
    39 8jho:g (7.6) BS02 dna ? GO:0000786 ... P06897 37798513
    40 8jho:h (7.6) BS01 dna ? GO:0000786 ... P02281 37798513
    41 8jho:h (7.6) BS02 dna ? GO:0000786 ... P02281 37798513
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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