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BioLiP
Download all results in tab-seperated text for 27 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8jh4:A (3.2) BS01 dna 2.7.7.6 GO:0000428 ... C4R4Y0 37981206
    2 8jh4:A (3.2) BS02 rna 2.7.7.6 GO:0000428 ... C4R4Y0 37981206
    3 8jh4:A (3.2) BS03 dna 2.7.7.6 GO:0000428 ... C4R4Y0 37981206
    4 8jh4:A (3.2) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 37981206
    5 8jh4:A (3.2) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 37981206
    6 8jh4:A (3.2) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 37981206
    7 8jh4:B (3.2) BS01 rna 2.7.7.6 GO:0000428 ... C4QZQ7 37981206
    8 8jh4:B (3.2) BS02 dna 2.7.7.6 GO:0000428 ... C4QZQ7 37981206
    9 8jh4:B (3.2) BS03 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 37981206
    10 8jh4:C (3.2) BS01 ZN ? GO:0000428 ... C4R7L2 37981206
    11 8jh4:E (3.2) BS01 dna ? GO:0001054 ... C4R3P8 37981206
    12 8jh4:I (3.2) BS01 ZN ? GO:0000428 ... F2QPE6 37981206
    13 8jh4:J (3.2) BS01 ZN ? GO:0000428 ... C4R009 37981206
    14 8jh4:L (3.2) BS01 ZN ? GO:0001054 ... F2QMI1 37981206
    15 8jh4:a (3.2) BS01 dna ? GO:0000775 ... P84243 37981206
    16 8jh4:a (3.2) BS02 dna ? GO:0000775 ... P84243 37981206
    17 8jh4:b (3.2) BS01 dna ? GO:0000781 ... P62805 37981206
    18 8jh4:b (3.2) BS02 dna ? GO:0000781 ... P62805 37981206
    19 8jh4:c (3.2) BS01 dna ? GO:0000786 ... P04908 37981206
    20 8jh4:c (3.2) BS02 dna ? GO:0000786 ... P04908 37981206
    21 8jh4:d (3.2) BS01 dna ? GO:0000786 ... P06899 37981206
    22 8jh4:d (3.2) BS02 dna ? GO:0000786 ... P06899 37981206
    23 8jh4:e (3.2) BS01 dna ? GO:0000775 ... P84243 37981206
    24 8jh4:e (3.2) BS02 dna ? GO:0000775 ... P84243 37981206
    25 8jh4:f (3.2) BS01 dna ? GO:0000781 ... P62805 37981206
    26 8jh4:g (3.2) BS01 dna ? GO:0000786 ... P04908 37981206
    27 8jh4:g (3.2) BS02 dna ? GO:0000786 ... P04908 37981206
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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