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BioLiP
Download all results in tab-seperated text for 58 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8j0d:3 (3.19) BS01 CLA ? GO:0009416 ... B8BUU4 37878698
    2 8j0d:3 (3.19) BS02 CLA ? GO:0009416 ... B8BUU4 37878698
    3 8j0d:3 (3.19) BS03 CLA ? GO:0009416 ... B8BUU4 37878698
    4 8j0d:3 (3.19) BS04 CLA ? GO:0009416 ... B8BUU4 37878698
    5 8j0d:3 (3.19) BS05 CLA ? GO:0009416 ... B8BUU4 37878698
    6 8j0d:3 (3.19) BS06 CLA ? GO:0009416 ... B8BUU4 37878698
    7 8j0d:3 (3.19) BS07 CLA ? GO:0009416 ... B8BUU4 37878698
    8 8j0d:3 (3.19) BS08 KC1 ? GO:0009416 ... B8BUU4 37878698
    9 8j0d:3 (3.19) BS09 CLA ? GO:0009416 ... B8BUU4 37878698
    10 8j0d:3 (3.19) BS10 CLA ? GO:0009416 ... B8BUU4 37878698
    11 8j0d:3 (3.19) BS11 A86 ? GO:0009416 ... B8BUU4 37878698
    12 8j0d:3 (3.19) BS12 DD6 ? GO:0009416 ... B8BUU4 37878698
    13 8j0d:3 (3.19) BS13 A86 ? GO:0009416 ... B8BUU4 37878698
    14 8j0d:3 (3.19) BS14 CLA ? GO:0009416 ... B8BUU4 37878698
    15 8j0d:4 (3.19) BS01 CLA ? GO:0009416 ... B8BVI1 37878698
    16 8j0d:4 (3.19) BS02 A86 ? GO:0009416 ... B8BVI1 37878698
    17 8j0d:4 (3.19) BS03 DD6 ? GO:0009416 ... B8BVI1 37878698
    18 8j0d:4 (3.19) BS04 A86 ? GO:0009416 ... B8BVI1 37878698
    19 8j0d:4 (3.19) BS05 CLA ? GO:0009416 ... B8BVI1 37878698
    20 8j0d:4 (3.19) BS06 CLA ? GO:0009416 ... B8BVI1 37878698
    21 8j0d:4 (3.19) BS07 KC2 ? GO:0009416 ... B8BVI1 37878698
    22 8j0d:4 (3.19) BS08 CLA ? GO:0009416 ... B8BVI1 37878698
    23 8j0d:4 (3.19) BS09 CLA ? GO:0009416 ... B8BVI1 37878698
    24 8j0d:4 (3.19) BS10 CLA ? GO:0009416 ... B8BVI1 37878698
    25 8j0d:4 (3.19) BS11 CLA ? GO:0009416 ... B8BVI1 37878698
    26 8j0d:4 (3.19) BS12 CLA ? GO:0009416 ... B8BVI1 37878698
    27 8j0d:4 (3.19) BS13 CLA ? GO:0009416 ... B8BVI1 37878698
    28 8j0d:4 (3.19) BS14 CLA ? GO:0009416 ... B8BVI1 37878698
    29 8j0d:4 (3.19) BS15 CLA ? GO:0009416 ... B8BVI1 37878698
    30 8j0d:4 (3.19) BS16 CLA ? GO:0009416 ... B8BVI1 37878698
    31 8j0d:5 (3.19) BS01 CLA ? GO:0009765 ... B8BX92 37878698
    32 8j0d:5 (3.19) BS02 A86 ? GO:0009765 ... B8BX92 37878698
    33 8j0d:5 (3.19) BS03 A86 ? GO:0009765 ... B8BX92 37878698
    34 8j0d:5 (3.19) BS04 A86 ? GO:0009765 ... B8BX92 37878698
    35 8j0d:5 (3.19) BS05 A86 ? GO:0009765 ... B8BX92 37878698
    36 8j0d:5 (3.19) BS06 CLA ? GO:0009765 ... B8BX92 37878698
    37 8j0d:5 (3.19) BS07 CLA ? GO:0009765 ... B8BX92 37878698
    38 8j0d:5 (3.19) BS08 KC2 ? GO:0009765 ... B8BX92 37878698
    39 8j0d:5 (3.19) BS09 CLA ? GO:0009765 ... B8BX92 37878698
    40 8j0d:5 (3.19) BS10 CLA ? GO:0009765 ... B8BX92 37878698
    41 8j0d:5 (3.19) BS11 CLA ? GO:0009765 ... B8BX92 37878698
    42 8j0d:5 (3.19) BS12 CLA ? GO:0009765 ... B8BX92 37878698
    43 8j0d:5 (3.19) BS13 KC1 ? GO:0009765 ... B8BX92 37878698
    44 8j0d:5 (3.19) BS14 CLA ? GO:0009765 ... B8BX92 37878698
    45 8j0d:6 (3.19) BS01 CLA ? GO:0009416 ... B8CEV5 37878698
    46 8j0d:6 (3.19) BS02 A86 ? GO:0009416 ... B8CEV5 37878698
    47 8j0d:6 (3.19) BS03 A86 ? GO:0009416 ... B8CEV5 37878698
    48 8j0d:6 (3.19) BS04 A86 ? GO:0009416 ... B8CEV5 37878698
    49 8j0d:6 (3.19) BS05 CLA ? GO:0009416 ... B8CEV5 37878698
    50 8j0d:6 (3.19) BS06 CLA ? GO:0009416 ... B8CEV5 37878698
    51 8j0d:6 (3.19) BS07 KC2 ? GO:0009416 ... B8CEV5 37878698
    52 8j0d:6 (3.19) BS08 CLA ? GO:0009416 ... B8CEV5 37878698
    53 8j0d:6 (3.19) BS09 CLA ? GO:0009416 ... B8CEV5 37878698
    54 8j0d:6 (3.19) BS10 CLA ? GO:0009416 ... B8CEV5 37878698
    55 8j0d:6 (3.19) BS11 CLA ? GO:0009416 ... B8CEV5 37878698
    56 8j0d:6 (3.19) BS12 KC1 ? GO:0009416 ... B8CEV5 37878698
    57 8j0d:6 (3.19) BS13 CLA ? GO:0009416 ... B8CEV5 37878698
    58 8j0d:6 (3.19) BS14 CLA ? GO:0009416 ... B8CEV5 37878698
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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