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BioLiP
Download all results in tab-seperated text for 79 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ia0:CA (2.7) BS01 rna ? GO:0000027 ... G0RXZ3 37129998
    2 8ia0:CB (2.7) BS01 rna ? GO:0000470 ... G0S7X0 37129998
    3 8ia0:CC (2.7) BS01 rna ? GO:0000463 ... G0SCK6 37129998
    4 8ia0:CD (2.7) BS01 rna ? GO:0000463 ... G0SFB5 37129998
    5 8ia0:CE (2.7) BS01 rna 3.6.4.13 GO:0000463 ... G0RYU9 37129998
    6 8ia0:CF (2.7) BS01 rna ? GO:0000027 ... G0S616 37129998
    7 8ia0:CG (2.7) BS01 rna ? GO:0003723 ... G0S435 37129998
    8 8ia0:CH (2.7) BS01 rna ? GO:0003723 ... G0S8F1 37129998
    9 8ia0:CH (2.7) BS02 GTP ? GO:0003723 ... G0S8F1 37129998
    10 8ia0:CI (2.7) BS01 rna ? GO:0000463 ... G0S1H0 37129998
    11 8ia0:CJ (2.7) BS01 rna ? GO:0000463 ... G0SHX6 37129998
    12 8ia0:CJ (2.7) BS02 rna ? GO:0000463 ... G0SHX6 37129998
    13 8ia0:CK (2.7) BS01 rna ? GO:0000460 ... G0S081 37129998
    14 8ia0:CL (2.7) BS01 rna ? GO:0005525 ... G0SEW3 37129998
    15 8ia0:CM (2.7) BS01 rna ? GO:0000463 ... G0SFL0 37129998
    16 8ia0:CM (2.7) BS02 rna ? GO:0000463 ... G0SFL0 37129998
    17 8ia0:CN (2.7) BS01 rna ? GO:0000054 ... G0S683 37129998
    18 8ia0:CO (2.7) BS01 rna ? GO:0030687 ... G0SHK0 37129998
    19 8ia0:CP (2.7) BS01 rna ? GO:0000470 ... G0SHQ0 37129998
    20 8ia0:CQ (2.7) BS01 rna ? GO:0005730 ... G0S497 37129998
    21 8ia0:CQ (2.7) BS02 ZN ? GO:0005730 ... G0S497 37129998
    22 8ia0:CR (2.7) BS01 rna ? GO:0005730 ... G0S832 37129998
    23 8ia0:CR (2.7) BS02 rna ? GO:0005730 ... G0S832 37129998
    24 8ia0:CS (2.7) BS01 rna ? GO:0000463 ... G0SGD8 37129998
    25 8ia0:CT (2.7) BS01 rna ? GO:0003682 ... G0S5L0 37129998
    26 8ia0:CU (2.7) BS01 rna ? GO:0005634 ... G0SGC2 37129998
    27 8ia0:CV (2.7) BS01 rna ? GO:0003735 ... G0SHJ6 37129998
    28 8ia0:CW (2.7) BS01 rna 3.6.4.13 GO:0003676 ... G0RYG4 37129998
    29 8ia0:CW (2.7) BS02 ADP 3.6.4.13 GO:0003676 ... G0RYG4 37129998
    30 8ia0:CX (2.7) BS01 rna ? GO:0003729 ... G0SGJ0 37129998
    31 8ia0:CY (2.7) BS01 rna ? GO:0005634 ... G0SD05 37129998
    32 8ia0:CZ (2.7) BS01 rna ? GO:0003723 ... G0S0I6 37129998
    33 8ia0:Ca (2.7) BS01 rna ? GO:0005634 ... G0S7E9 37129998
    34 8ia0:Cz (2.7) BS01 rna ? GO:0005634 ... G0SCP3 37129998
    35 8ia0:LA (2.7) BS01 rna ? GO:0002181 ... G0S4P8 37129998
    36 8ia0:LB (2.7) BS01 rna ? GO:0003723 ... G0RXW1 37129998
    37 8ia0:LC (2.7) BS01 rna ? GO:0003723 ... G0SFC3 37129998
    38 8ia0:LC (2.7) BS02 rna ? GO:0003723 ... G0SFC3 37129998
    39 8ia0:LE (2.7) BS01 rna ? GO:0000027 ... G0S0D6 37129998
    40 8ia0:LF (2.7) BS01 rna ? GO:0000463 ... G0SFL0 37129998
    41 8ia0:LG (2.7) BS01 rna ? GO:0000470 ... G0SAJ9 37129998
    42 8ia0:LG (2.7) BS02 rna ? GO:0000470 ... G0SAJ9 37129998
    43 8ia0:LH (2.7) BS01 rna ? GO:0003735 ... G0S0E5 37129998
    44 8ia0:LK (2.7) BS01 rna ? GO:0003735 ... G0SGH8 37129998
    45 8ia0:LL (2.7) BS01 rna ? GO:0003723 ... G0S992 37129998
    46 8ia0:LL (2.7) BS02 rna ? GO:0003723 ... G0S992 37129998
    47 8ia0:LM (2.7) BS01 rna ? GO:0003723 ... G0S1R0 37129998
    48 8ia0:LN (2.7) BS01 rna ? GO:0002181 ... G0RZ88 37129998
    49 8ia0:LN (2.7) BS02 rna ? GO:0002181 ... G0RZ88 37129998
    50 8ia0:LO (2.7) BS01 rna ? GO:0003729 ... G0SH61 37129998
    51 8ia0:LP (2.7) BS01 rna ? GO:0002181 ... G0SGY1 37129998
    52 8ia0:LP (2.7) BS02 rna ? GO:0002181 ... G0SGY1 37129998
    53 8ia0:LQ (2.7) BS01 rna ? GO:0003723 ... G0S9B5 37129998
    54 8ia0:LR (2.7) BS01 rna ? GO:0003735 ... G0S9T3 37129998
    55 8ia0:LS (2.7) BS01 rna ? GO:0003735 ... G0SCE2 37129998
    56 8ia0:LT (2.7) BS01 rna ? GO:0003735 ... G0S0Z3 37129998
    57 8ia0:LU (2.7) BS01 rna ? GO:0002181 ... G0SDS8 37129998
    58 8ia0:LV (2.7) BS01 rna ? GO:0003735 ... G0SI44 37129998
    59 8ia0:LX (2.7) BS01 rna ? GO:0000027 ... G0S507 37129998
    60 8ia0:LX (2.7) BS02 rna ? GO:0000027 ... G0S507 37129998
    61 8ia0:LY (2.7) BS01 rna ? GO:0002181 ... G0RYN9 37129998
    62 8ia0:LY (2.7) BS02 rna ? GO:0002181 ... G0RYN9 37129998
    63 8ia0:LZ (2.7) BS01 rna ? GO:0003735 ... G0RZE9 37129998
    64 8ia0:Lc (2.7) BS01 rna ? GO:0003723 ... G0SEI0 37129998
    65 8ia0:Ld (2.7) BS01 rna ? GO:0002181 ... G0SD68 37129998
    66 8ia0:Le (2.7) BS01 rna ? GO:0003735 ... G0S6V4 37129998
    67 8ia0:Lf (2.7) BS01 rna ? GO:0002181 ... G0SCL3 37129998
    68 8ia0:Lg (2.7) BS01 rna ? GO:0003735 ... G0SFN0 37129998
    69 8ia0:Lh (2.7) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37129998
    70 8ia0:Lh (2.7) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37129998
    71 8ia0:Li (2.7) BS01 rna ? GO:0002181 ... G0SBN1 37129998
    72 8ia0:Lj (2.7) BS01 rna ? GO:0003723 ... G0S101 37129998
    73 8ia0:Lj (2.7) BS02 rna ? GO:0003723 ... G0S101 37129998
    74 8ia0:Lj (2.7) BS03 ZN ? GO:0003723 ... G0S101 37129998
    75 8ia0:Lk (2.7) BS01 rna ? GO:0003735 ... G0SG89 37129998
    76 8ia0:Ll (2.7) BS01 rna ? GO:0003735 ... Q2H9R2 37129998
    77 8ia0:Ll (2.7) BS02 rna ? GO:0003735 ... Q2H9R2 37129998
    78 8ia0:Lp (2.7) BS01 ZN ? GO:0003735 ... G0S6B0 37129998
    79 8ia0:Lq (2.7) BS01 rna ? GO:0000470 ... G0S4Z9 37129998
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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