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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8hrb:A (3.78) BS01 rna N/A N/A N/A 36764292
    2 8hrb:B (3.78) BS01 rna N/A N/A N/A 36764292
    3 8hrb:B (3.78) BS02 ATP N/A N/A N/A 36764292
    4 8hrb:C (3.78) BS01 rna N/A N/A N/A 36764292
    5 8hrb:D (3.78) BS01 rna N/A N/A N/A 36764292
    6 8hrb:E (3.78) BS01 rna N/A N/A N/A 36764292
    7 8hrb:E (3.78) BS02 ATP N/A N/A N/A 36764292
    8 8hrb:F (3.78) BS01 rna N/A N/A N/A 36764292
    9 8hrb:G (3.78) BS01 ATP N/A N/A N/A 36764292
    10 8hrb:H (3.78) BS01 rna N/A N/A N/A 36764292
    11 8hrb:H (3.78) BS02 ATP N/A N/A N/A 36764292
    12 8hrb:K (3.78) BS01 rna N/A N/A N/A 36764292
    13 8hrb:K (3.78) BS02 ATP N/A N/A N/A 36764292
    14 8hrb:L (3.78) BS01 rna N/A N/A N/A 36764292
    15 8hrb:M (3.78) BS01 rna N/A N/A N/A 36764292
    16 8hrb:P (3.78) BS01 rna N/A N/A N/A 36764292
    17 8hrb:P (3.78) BS02 ATP N/A N/A N/A 36764292
    18 8hrb:Q (3.78) BS01 ATP N/A N/A N/A 36764292
    19 8hrb:R (3.78) BS01 rna N/A N/A N/A 36764292
    20 8hrb:R (3.78) BS02 ATP N/A N/A N/A 36764292
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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