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BioLiP
Download all results in tab-seperated text for 45 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8h6k:2C (2.7) BS01 rna ? GO:0000398 ... P08579 38658629
    2 8h6k:2D (2.7) BS01 rna ? GO:0000389 ... Q15459 38658629
    3 8h6k:2F (2.7) BS01 rna ? GO:0000375 ... Q12874 38658629
    4 8h6k:2G (2.7) BS01 rna ? GO:0000245 ... O75533 38658629
    5 8h6k:2G (2.7) BS02 rna ? GO:0000245 ... O75533 38658629
    6 8h6k:2c (2.7) BS01 rna ? GO:0000245 ... P62316 38658629
    7 8h6k:2f (2.7) BS01 rna ? GO:0000245 ... P62308 38658629
    8 8h6k:2g (2.7) BS01 rna ? GO:0000243 ... P62318 38658629
    9 8h6k:4B (2.7) BS01 rna ? GO:0000244 ... O43395 38658629
    10 8h6k:4B (2.7) BS02 rna ? GO:0000244 ... O43395 38658629
    11 8h6k:4D (2.7) BS01 rna ? GO:0000244 ... Q8WWY3 38658629
    12 8h6k:4D (2.7) BS02 rna ? GO:0000244 ... Q8WWY3 38658629
    13 8h6k:4E (2.7) BS01 rna ? GO:0000398 ... P55769 38658629
    14 8h6k:4E (2.7) BS02 rna ? GO:0000398 ... P55769 38658629
    15 8h6k:4F (2.7) BS01 rna ? GO:0000245 ... P83876 38658629
    16 8h6k:4F (2.7) BS02 rna ? GO:0000245 ... P83876 38658629
    17 8h6k:4G (2.7) BS01 rna ? GO:0000244 ... O94906 38658629
    18 8h6k:4G (2.7) BS02 rna ? GO:0000244 ... O94906 38658629
    19 8h6k:4I (2.7) BS01 rna ? GO:0000398 ... O75554 38658629
    20 8h6k:4I (2.7) BS02 ZN ? GO:0000398 ... O75554 38658629
    21 8h6k:4K (2.7) BS01 rna ? GO:0000398 ... P55081 38658629
    22 8h6k:4K (2.7) BS02 rna ? GO:0000398 ... P55081 38658629
    23 8h6k:4N (2.7) BS01 rna ? GO:0000398 ... Q96NC0 38658629
    24 8h6k:4N (2.7) BS02 rna ? GO:0000398 ... Q96NC0 38658629
    25 8h6k:4N (2.7) BS03 ZN ? GO:0000398 ... Q96NC0 38658629
    26 8h6k:4c (2.7) BS01 rna ? GO:0000245 ... P62316 38658629
    27 8h6k:4d (2.7) BS01 rna ? GO:0000387 ... P62306 38658629
    28 8h6k:4f (2.7) BS01 rna ? GO:0000245 ... P62308 38658629
    29 8h6k:5B (2.7) BS01 rna ? GO:0000244 ... Q6P2Q9 38658629
    30 8h6k:5B (2.7) BS02 rna ? GO:0000244 ... Q6P2Q9 38658629
    31 8h6k:5B (2.7) BS03 rna ? GO:0000244 ... Q6P2Q9 38658629
    32 8h6k:5B (2.7) BS04 rna ? GO:0000244 ... Q6P2Q9 38658629
    33 8h6k:5B (2.7) BS05 IHP ? GO:0000244 ... Q6P2Q9 38658629
    34 8h6k:5C (2.7) BS01 GTP ? GO:0000398 ... Q15029 38658629
    35 8h6k:5D (2.7) BS01 rna 3.6.4.13 GO:0000354 ... O75643 38658629
    36 8h6k:5E (2.7) BS01 rna ? GO:0000375 ... Q96DI7 38658629
    37 8h6k:5a (2.7) BS01 rna ? GO:0000387 ... P14678 38658629
    38 8h6k:5b (2.7) BS01 rna ? GO:0000243 ... P62314 38658629
    39 8h6k:5c (2.7) BS01 rna ? GO:0000245 ... P62316 38658629
    40 8h6k:5d (2.7) BS01 rna ? GO:0000387 ... P62306 38658629
    41 8h6k:5e (2.7) BS01 rna ? GO:0000245 ... P62304 38658629
    42 8h6k:5f (2.7) BS01 rna ? GO:0000245 ... P62308 38658629
    43 8h6k:5g (2.7) BS01 rna ? GO:0000243 ... P62318 38658629
    44 8h6k:6a (2.7) BS01 rna ? GO:0000244 ... Q9Y333 38658629
    45 8h6k:6g (2.7) BS01 rna ? GO:0000398 ... O95777 38658629
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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