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BioLiP
Download all results in tab-seperated text for 32 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8h0v:A (3.8) BS01 rna 2.7.7.6 GO:0000428 ... C4R4Y0 36435862
    2 8h0v:A (3.8) BS02 dna 2.7.7.6 GO:0000428 ... C4R4Y0 36435862
    3 8h0v:A (3.8) BS03 dna 2.7.7.6 GO:0000428 ... C4R4Y0 36435862
    4 8h0v:A (3.8) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 36435862
    5 8h0v:A (3.8) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 36435862
    6 8h0v:A (3.8) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 36435862
    7 8h0v:B (3.8) BS01 rna 2.7.7.6 GO:0000428 ... C4QZQ7 36435862
    8 8h0v:B (3.8) BS02 dna 2.7.7.6 GO:0000428 ... C4QZQ7 36435862
    9 8h0v:B (3.8) BS03 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 36435862
    10 8h0v:C (3.8) BS01 ZN ? GO:0000428 ... C4R7L2 36435862
    11 8h0v:E (3.8) BS01 dna ? GO:0001054 ... C4R3P8 36435862
    12 8h0v:I (3.8) BS01 ZN ? GO:0000428 ... F2QPE6 36435862
    13 8h0v:I (3.8) BS02 ZN ? GO:0000428 ... F2QPE6 36435862
    14 8h0v:J (3.8) BS01 ZN ? GO:0000428 ... C4R009 36435862
    15 8h0v:L (3.8) BS01 ZN ? GO:0001054 ... F2QMI1 36435862
    16 8h0v:a (3.8) BS01 dna ? GO:0000786 ... P68431 36435862
    17 8h0v:a (3.8) BS02 dna ? GO:0000786 ... P68431 36435862
    18 8h0v:b (3.8) BS01 dna ? GO:0000781 ... P62805 36435862
    19 8h0v:b (3.8) BS02 dna ? GO:0000781 ... P62805 36435862
    20 8h0v:c (3.8) BS01 dna ? GO:0000786 ... P04908 36435862
    21 8h0v:c (3.8) BS02 dna ? GO:0000786 ... P04908 36435862
    22 8h0v:d (3.8) BS01 dna ? GO:0000786 ... P06899 36435862
    23 8h0v:d (3.8) BS02 dna ? GO:0000786 ... P06899 36435862
    24 8h0v:e (3.8) BS01 dna ? GO:0000786 ... P68431 36435862
    25 8h0v:e (3.8) BS02 dna ? GO:0000786 ... P68431 36435862
    26 8h0v:f (3.8) BS01 dna ? GO:0000781 ... P62805 36435862
    27 8h0v:f (3.8) BS02 dna ? GO:0000781 ... P62805 36435862
    28 8h0v:g (3.8) BS01 dna ? GO:0000786 ... P04908 36435862
    29 8h0v:g (3.8) BS02 dna ? GO:0000786 ... P04908 36435862
    30 8h0v:h (3.8) BS01 dna ? GO:0000786 ... P06899 36435862
    31 8h0v:h (3.8) BS02 dna ? GO:0000786 ... P06899 36435862
    32 8h0v:u (3.8) BS01 dna ? GO:0000122 ... P16403 36435862
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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