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BioLiP
Download all results in tab-seperated text for 40 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8g9b:A (3.0) BS01 GTP 1.1.1.205 GO:0000166 ... P12268 37414152
    2 8g9b:A (3.0) BS02 GTP 1.1.1.205 GO:0000166 ... P12268 37414152
    3 8g9b:A (3.0) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 37414152
    4 8g9b:A (3.0) BS04 IMP 1.1.1.205 GO:0000166 ... P12268 37414152
    5 8g9b:A (3.0) BS05 NAD 1.1.1.205 GO:0000166 ... P12268 37414152
    6 8g9b:B (3.0) BS01 GTP 1.1.1.205 GO:0000166 ... P12268 37414152
    7 8g9b:B (3.0) BS02 GTP 1.1.1.205 GO:0000166 ... P12268 37414152
    8 8g9b:B (3.0) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 37414152
    9 8g9b:B (3.0) BS04 IMP 1.1.1.205 GO:0000166 ... P12268 37414152
    10 8g9b:B (3.0) BS05 NAD 1.1.1.205 GO:0000166 ... P12268 37414152
    11 8g9b:C (3.0) BS01 GTP 1.1.1.205 GO:0000166 ... P12268 37414152
    12 8g9b:C (3.0) BS02 GTP 1.1.1.205 GO:0000166 ... P12268 37414152
    13 8g9b:C (3.0) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 37414152
    14 8g9b:C (3.0) BS04 IMP 1.1.1.205 GO:0000166 ... P12268 37414152
    15 8g9b:C (3.0) BS05 NAD 1.1.1.205 GO:0000166 ... P12268 37414152
    16 8g9b:D (3.0) BS01 GTP 1.1.1.205 GO:0000166 ... P12268 37414152
    17 8g9b:D (3.0) BS02 GTP 1.1.1.205 GO:0000166 ... P12268 37414152
    18 8g9b:D (3.0) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 37414152
    19 8g9b:D (3.0) BS04 IMP 1.1.1.205 GO:0000166 ... P12268 37414152
    20 8g9b:D (3.0) BS05 NAD 1.1.1.205 GO:0000166 ... P12268 37414152
    21 8g9b:E (3.0) BS01 GTP 1.1.1.205 GO:0000166 ... P12268 37414152
    22 8g9b:E (3.0) BS02 GTP 1.1.1.205 GO:0000166 ... P12268 37414152
    23 8g9b:E (3.0) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 37414152
    24 8g9b:E (3.0) BS04 IMP 1.1.1.205 GO:0000166 ... P12268 37414152
    25 8g9b:E (3.0) BS05 NAD 1.1.1.205 GO:0000166 ... P12268 37414152
    26 8g9b:F (3.0) BS01 GTP 1.1.1.205 GO:0000166 ... P12268 37414152
    27 8g9b:F (3.0) BS02 GTP 1.1.1.205 GO:0000166 ... P12268 37414152
    28 8g9b:F (3.0) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 37414152
    29 8g9b:F (3.0) BS04 IMP 1.1.1.205 GO:0000166 ... P12268 37414152
    30 8g9b:F (3.0) BS05 NAD 1.1.1.205 GO:0000166 ... P12268 37414152
    31 8g9b:G (3.0) BS01 GTP 1.1.1.205 GO:0000166 ... P12268 37414152
    32 8g9b:G (3.0) BS02 GTP 1.1.1.205 GO:0000166 ... P12268 37414152
    33 8g9b:G (3.0) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 37414152
    34 8g9b:G (3.0) BS04 IMP 1.1.1.205 GO:0000166 ... P12268 37414152
    35 8g9b:G (3.0) BS05 NAD 1.1.1.205 GO:0000166 ... P12268 37414152
    36 8g9b:H (3.0) BS01 GTP 1.1.1.205 GO:0000166 ... P12268 37414152
    37 8g9b:H (3.0) BS02 GTP 1.1.1.205 GO:0000166 ... P12268 37414152
    38 8g9b:H (3.0) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 37414152
    39 8g9b:H (3.0) BS04 IMP 1.1.1.205 GO:0000166 ... P12268 37414152
    40 8g9b:H (3.0) BS05 NAD 1.1.1.205 GO:0000166 ... P12268 37414152
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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