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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8fkr:BA (2.89) BS01 rna ? GO:0002181 ... P30050 37410842
    2 8fkr:L6 (2.89) BS01 rna ? GO:0001824 ... P26373 37410842
    3 8fkr:L6 (2.89) BS02 rna ? GO:0001824 ... P26373 37410842
    4 8fkr:L7 (2.89) BS01 rna ? GO:0002181 ... P40429 37410842
    5 8fkr:L8 (2.89) BS01 rna ? GO:0002181 ... P50914 37410842
    6 8fkr:L9 (2.89) BS01 rna ? GO:0002181 ... P61313 37410842
    7 8fkr:L9 (2.89) BS02 rna ? GO:0002181 ... P61313 37410842
    8 8fkr:L9 (2.89) BS03 MG ? GO:0002181 ... P61313 37410842
    9 8fkr:LA (2.89) BS01 rna ? GO:0002181 ... P18621 37410842
    10 8fkr:LA (2.89) BS02 rna ? GO:0002181 ... P18621 37410842
    11 8fkr:LB (2.89) BS01 rna ? GO:0002181 ... Q07020 37410842
    12 8fkr:LC (2.89) BS01 rna ? GO:0002181 ... Q02543 37410842
    13 8fkr:LE (2.89) BS01 rna ? GO:0002181 ... P46778 37410842
    14 8fkr:LH (2.89) BS01 rna ? GO:0000027 ... P62750 37410842
    15 8fkr:LH (2.89) BS02 rna ? GO:0000027 ... P62750 37410842
    16 8fkr:LI (2.89) BS01 rna ? GO:0002181 ... P61254 37410842
    17 8fkr:LI (2.89) BS02 rna ? GO:0002181 ... P61254 37410842
    18 8fkr:LK (2.89) BS01 rna ? GO:0002181 ... P46776 37410842
    19 8fkr:LN (2.89) BS01 rna ? GO:0002181 ... P39023 37410842
    20 8fkr:LQ (2.89) BS01 rna ? GO:0002181 ... P62910 37410842
    21 8fkr:LS (2.89) BS01 rna ? GO:0000463 ... P42766 37410842
    22 8fkr:LS (2.89) BS02 rna ? GO:0000463 ... P42766 37410842
    23 8fkr:LT (2.89) BS01 rna ? GO:0000049 ... P18077 37410842
    24 8fkr:LT (2.89) BS02 MG ? GO:0000049 ... P18077 37410842
    25 8fkr:LU (2.89) BS01 rna ? GO:0002181 ... Q9Y3U8 37410842
    26 8fkr:LW (2.89) BS01 rna ? GO:0002181 ... P61927 37410842
    27 8fkr:LW (2.89) BS02 rna ? GO:0002181 ... P61927 37410842
    28 8fkr:LW (2.89) BS03 ZN ? GO:0002181 ... P61927 37410842
    29 8fkr:NE (2.89) BS01 rna ? GO:0001652 ... O75683 37410842
    30 8fkr:NF (2.89) BS01 rna ? GO:0000460 ... O95478 37410842
    31 8fkr:NG (2.89) BS01 rna ? GO:0000460 ... Q9Y3B9 37410842
    32 8fkr:NM (2.89) BS01 rna ? GO:0000460 ... Q9BXY0 37410842
    33 8fkr:NM (2.89) BS02 SF4 ? GO:0000460 ... Q9BXY0 37410842
    34 8fkr:NN (2.89) BS01 rna ? GO:0000027 ... Q9NQ55 37410842
    35 8fkr:NO (2.89) BS01 rna ? GO:0003723 ... P56182 37410842
    36 8fkr:NQ (2.89) BS01 rna ? GO:0000176 ... Q6RFH5 37410842
    37 8fkr:NS (2.89) BS01 rna ? GO:0000460 ... Q9H9Y2 37410842
    38 8fkr:NS (2.89) BS02 rna ? GO:0000460 ... Q9H9Y2 37410842
    39 8fkr:SA (2.89) BS01 rna ? GO:0002181 ... P36578 37410842
    40 8fkr:SA (2.89) BS02 rna ? GO:0002181 ... P36578 37410842
    41 8fkr:SC (2.89) BS01 rna ? GO:0000027 ... Q02878 37410842
    42 8fkr:SD (2.89) BS01 rna ? GO:0000463 ... P18124 37410842
    43 8fkr:SE (2.89) BS01 rna ? GO:0000470 ... P62424 37410842
    44 8fkr:SE (2.89) BS02 rna ? GO:0000470 ... P62424 37410842
    45 8fkr:SG (2.89) BS01 rna ? GO:0002181 ... P32969 37410842
    46 8fkr:SH (2.89) BS01 rna ? GO:0000463 ... Q9BYG3 37410842
    47 8fkr:SI (2.89) BS01 rna ? GO:0000463 ... Q6DKI1 37410842
    48 8fkr:SK (2.89) BS01 rna ? GO:0000054 ... P56537 37410842
    49 8fkr:SL (2.89) BS01 rna ? GO:0000462 ... O76021 37410842
    50 8fkr:SM (2.89) BS01 rna ? GO:0000463 ... O00541 37410842
    51 8fkr:SM (2.89) BS02 rna ? GO:0000463 ... O00541 37410842
    52 8fkr:SN (2.89) BS01 rna ? GO:0003723 ... Q99848 37410842
    53 8fkr:SO (2.89) BS01 rna ? GO:0000027 ... Q8TDN6 37410842
    54 8fkr:SQ (2.89) BS01 rna ? GO:0000027 ... Q9UKD2 37410842
    55 8fkr:SR (2.89) BS01 rna ? GO:0000079 ... Q9BZE4 37410842
    56 8fkr:SR (2.89) BS02 GDP ? GO:0000079 ... Q9BZE4 37410842
    57 8fkr:SS (2.89) BS01 rna ? GO:0000027 ... Q14137 37410842
    58 8fkr:SV (2.89) BS01 rna ? GO:0003735 ... Q9UHA3 37410842
    59 8fkr:SV (2.89) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    60 8fkr:SW (2.89) BS01 rna 3.6.4.13 GO:0000463 ... Q9NVP1 37410842
    61 8fkr:SZ (2.89) BS01 rna ? GO:0003723 ... Q9Y3C1 37410842
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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