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BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8cst:0 (2.85) BS01 rna ? GO:0003735 ... P82930 36482135
    2 8cst:3 (2.85) BS01 rna ? GO:0005515 ... Q9NWT8 36482135
    3 8cst:6 (2.85) BS01 rna ? GO:0005515 ... Q8N0V3 36482135
    4 8cst:7 (2.85) BS01 rna 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    5 8cst:7 (2.85) BS02 SF4 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    6 8cst:7 (2.85) BS03 SAM 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    7 8cst:B (2.85) BS01 rna ? GO:0003735 ... Q9Y399 36482135
    8 8cst:B (2.85) BS02 MG ? GO:0003735 ... Q9Y399 36482135
    9 8cst:D (2.85) BS01 rna ? GO:0003723 ... P82675 36482135
    10 8cst:E (2.85) BS01 rna ? GO:0003735 ... P82932 36482135
    11 8cst:F (2.85) BS01 rna ? GO:0000028 ... Q9Y2R9 36482135
    12 8cst:G (2.85) BS01 rna ? GO:0003723 ... P82933 36482135
    13 8cst:H (2.85) BS01 rna ? GO:0003674 ... P82664 36482135
    14 8cst:I (2.85) BS01 rna ? GO:0003723 ... P82912 36482135
    15 8cst:J (2.85) BS01 rna ? GO:0003723 ... O15235 36482135
    16 8cst:K (2.85) BS01 rna ? GO:0003723 ... O60783 36482135
    17 8cst:L (2.85) BS01 rna ? GO:0003723 ... P82914 36482135
    18 8cst:M (2.85) BS01 rna ? GO:0003735 ... Q9Y3D3 36482135
    19 8cst:N (2.85) BS01 rna ? GO:0003735 ... Q9Y2R5 36482135
    20 8cst:O (2.85) BS01 rna ? GO:0003735 ... Q9Y676 36482135
    21 8cst:O (2.85) BS02 ZN ? GO:0003735 ... Q9Y676 36482135
    22 8cst:P (2.85) BS01 rna ? GO:0003735 ... Q9Y3D5 36482135
    23 8cst:P (2.85) BS02 FES ? GO:0003735 ... Q9Y3D5 36482135
    24 8cst:Q (2.85) BS01 rna ? GO:0003723 ... P82921 36482135
    25 8cst:S (2.85) BS01 rna ? GO:0003723 ... Q9Y3D9 36482135
    26 8cst:T (2.85) BS01 rna ? GO:0003735 ... P82663 36482135
    27 8cst:T (2.85) BS02 FES ? GO:0003735 ... P82663 36482135
    28 8cst:U (2.85) BS01 rna ? GO:0003723 ... Q9BYN8 36482135
    29 8cst:V (2.85) BS01 rna ? GO:0000049 ... Q92552 36482135
    30 8cst:X (2.85) BS01 rna ? GO:0003723 ... P51398 36482135
    31 8cst:X (2.85) BS02 ATP ? GO:0003723 ... P51398 36482135
    32 8cst:X (2.85) BS03 GDP ? GO:0003723 ... P51398 36482135
    33 8cst:Z (2.85) BS01 rna ? GO:0003735 ... Q9Y291 36482135
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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