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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8clh:A (2.5) BS01 GTP 3.6.5.- GO:0000226 ... P81947 38042952
    2 8clh:A (2.5) BS02 CA 3.6.5.- GO:0000226 ... P81947 38042952
    3 8clh:A (2.5) BS03 LOC 3.6.5.- GO:0000226 ... P81947 38042952
    4 8clh:B (2.5) BS01 GDP ? GO:0000226 ... Q6B856 38042952
    5 8clh:B (2.5) BS02 LOC ? GO:0000226 ... Q6B856 38042952
    6 8clh:B (2.5) BS03 EP ? GO:0000226 ... Q6B856 38042952
    7 8clh:B (2.5) BS04 POU ? GO:0000226 ... Q6B856 38042952
    8 8clh:B (2.5) BS05 VLB ? GO:0000226 ... Q6B856 38042952
    9 8clh:C (2.5) BS01 VLB 3.6.5.- GO:0000226 ... P81947 38042952
    10 8clh:C (2.5) BS02 GTP 3.6.5.- GO:0000226 ... P81947 38042952
    11 8clh:C (2.5) BS03 CA 3.6.5.- GO:0000226 ... P81947 38042952
    12 8clh:D (2.5) BS01 GDP ? GO:0000226 ... Q6B856 38042952
    13 8clh:D (2.5) BS02 EP ? GO:0000226 ... Q6B856 38042952
    14 8clh:D (2.5) BS03 BKF ? GO:0000226 ... Q6B856 38042952
    15 8clh:F (2.5) BS01 ACP 6.3.2.25 GO:0036211 ... A0A8V0Z8P0 38042952
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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