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BioLiP
Download all results in tab-seperated text for 51 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8cas:A (3.3) BS01 rna ? GO:0001677 ... P38912 37169754
    2 8cas:B (3.3) BS01 rna ? GO:0000054 ... P05750 37169754
    3 8cas:C (3.3) BS01 rna ? GO:0000028 ... P26783 37169754
    4 8cas:C (3.3) BS02 MG ? GO:0000028 ... P26783 37169754
    5 8cas:D (3.3) BS01 rna ? GO:0000054 ... Q08745 37169754
    6 8cas:E (3.3) BS01 rna ? GO:0000028 ... Q01855 37169754
    7 8cas:F (3.3) BS01 rna ? GO:0000028 ... P48589 37169754
    8 8cas:G (3.3) BS01 rna 3.6.5.3 GO:0000049 ... P32481 37169754
    9 8cas:G (3.3) BS02 MET 3.6.5.3 GO:0000049 ... P32481 37169754
    10 8cas:G (3.3) BS03 MG 3.6.5.3 GO:0000049 ... P32481 37169754
    11 8cas:H (3.3) BS01 rna ? GO:0000462 ... P0CX51 37169754
    12 8cas:I (3.3) BS01 rna ? GO:0000028 ... P02407 37169754
    13 8cas:J (3.3) BS01 rna ? GO:0000054 ... P0CX55 37169754
    14 8cas:K (3.3) BS01 rna ? GO:0000028 ... P07280 37169754
    15 8cas:L (3.3) BS01 rna ? GO:0000462 ... P38701 37169754
    16 8cas:M (3.3) BS01 rna ? GO:0002181 ... Q3E792 37169754
    17 8cas:N (3.3) BS01 rna ? GO:0002181 ... P41057 37169754
    18 8cas:O (3.3) BS01 rna ? GO:0003735 ... P05759 37169754
    19 8cas:O (3.3) BS02 ZN ? GO:0003735 ... P05759 37169754
    20 8cas:P (3.3) BS01 rna ? GO:0000028 ... P32905 37169754
    21 8cas:Q (3.3) BS01 rna ? GO:0000462 ... P33442 37169754
    22 8cas:R (3.3) BS01 rna ? GO:0000054 ... P25443 37169754
    23 8cas:S (3.3) BS01 rna ? GO:0002181 ... P0CX36 37169754
    24 8cas:T (3.3) BS01 rna ? GO:0000462 ... P0CX38 37169754
    25 8cas:U (3.3) BS01 rna ? GO:0002181 ... P26786 37169754
    26 8cas:V (3.3) BS01 rna ? GO:0000462 ... P0CX39 37169754
    27 8cas:W (3.3) BS01 rna ? GO:0000462 ... O13516 37169754
    28 8cas:X (3.3) BS01 rna ? GO:0000028 ... P0CX47 37169754
    29 8cas:Y (3.3) BS01 rna ? GO:0000462 ... P05756 37169754
    30 8cas:Z (3.3) BS01 rna ? GO:0000028 ... P06367 37169754
    31 8cas:b (3.3) BS01 rna ? GO:0002181 ... P0C0W1 37169754
    32 8cas:c (3.3) BS01 rna ? GO:0000462 ... P0CX29 37169754
    33 8cas:d (3.3) BS01 rna ? GO:0000462 ... P0CX31 37169754
    34 8cas:e (3.3) BS01 rna ? GO:0000054 ... P39938 37169754
    35 8cas:f (3.3) BS01 rna ? GO:0000028 ... P35997 37169754
    36 8cas:g (3.3) BS01 rna ? GO:0002181 ... P0CX33 37169754
    37 8cas:h (3.3) BS01 rna ? GO:0001965 ... P38011 37169754
    38 8cas:i (3.3) BS01 rna ? GO:0000028 ... Q3E7X9 37169754
    39 8cas:j (3.3) BS01 rna ? GO:0001731 ... P20459 37169754
    40 8cas:j (3.3) BS02 rna ? GO:0001731 ... P20459 37169754
    41 8cas:k (3.3) BS01 rna ? GO:0000054 ... Q03195 37169754
    42 8cas:k (3.3) BS02 ADP ? GO:0000054 ... Q03195 37169754
    43 8cas:k (3.3) BS03 ATP ? GO:0000054 ... Q03195 37169754
    44 8cas:k (3.3) BS04 SF4 ? GO:0000054 ... Q03195 37169754
    45 8cas:k (3.3) BS05 SF4 ? GO:0000054 ... Q03195 37169754
    46 8cas:m (3.3) BS01 ZN ? GO:0001732 ... P38431 37169754
    47 8cas:p (3.3) BS01 rna ? GO:0001732 ... P06103 37169754
    48 8cas:q (3.3) BS01 rna ? GO:0001732 ... P32497 37169754
    49 8cas:s (3.3) BS01 rna ? GO:0001731 ... P09064 37169754
    50 8cas:s (3.3) BS02 ZN ? GO:0001731 ... P09064 37169754
    51 8cas:x (3.3) BS01 rna ? GO:0003674 ... P38747 37169754
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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