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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7zx8:A (3.0) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 36424526
    2 7zx8:A (3.0) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 36424526
    3 7zx8:A (3.0) BS03 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 36424526
    4 7zx8:A (3.0) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 36424526
    5 7zx8:A (3.0) BS05 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 36424526
    6 7zx8:B (3.0) BS01 ZN 2.7.7.6 GO:0000428 ... I3LGP4 36424526
    7 7zx8:C (3.0) BS01 ZN ? GO:0000428 ... I3LCH3 36424526
    8 7zx8:I (3.0) BS01 ZN ? GO:0000428 ... P60899 36424526
    9 7zx8:I (3.0) BS02 ZN ? GO:0000428 ... P60899 36424526
    10 7zx8:J (3.0) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 36424526
    11 7zx8:L (3.0) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 36424526
    12 7zx8:M (3.0) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 36424526
    13 7zx8:M (3.0) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 36424526
    14 7zx8:M (3.0) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 36424526
    15 7zx8:O (3.0) BS01 dna ? GO:0000785 ... P20226 36424526
    16 7zx8:O (3.0) BS02 dna ? GO:0000785 ... P20226 36424526
    17 7zx8:R (3.0) BS01 dna 3.6.4.12 GO:0003677 ... P13984 36424526
    18 7zx8:R (3.0) BS02 dna 3.6.4.12 GO:0003677 ... P13984 36424526
    19 7zx8:b (3.0) BS01 dna ? GO:0000978 ... Q92966 36424526
    20 7zx8:b (3.0) BS02 dna ? GO:0000978 ... Q92966 36424526
    21 7zx8:b (3.0) BS03 ZN ? GO:0000978 ... Q92966 36424526
    22 7zx8:b (3.0) BS04 ZN ? GO:0000978 ... Q92966 36424526
    23 7zx8:c (3.0) BS01 dna ? GO:0000978 ... Q5SXM2 36424526
    24 7zx8:c (3.0) BS02 dna ? GO:0000978 ... Q5SXM2 36424526
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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