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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 543 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 7zqd:B (2.97) BS39 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    402 7zqd:B (2.97) BS40 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    403 7zqd:B (2.97) BS41 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    404 7zqd:B (2.97) BS42 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    405 7zqd:B (2.97) BS43 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    406 7zqd:B (2.97) BS44 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    407 7zqd:B (2.97) BS45 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    408 7zqd:B (2.97) BS46 PQN 1.97.1.12 GO:0000287 ... P09144 36229605
    409 7zqd:B (2.97) BS47 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    410 7zqd:B (2.97) BS48 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    411 7zqd:B2 (2.97) BS01 CL0 1.97.1.12 GO:0000287 ... P09144 36229605
    412 7zqd:B2 (2.97) BS02 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    413 7zqd:B2 (2.97) BS03 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    414 7zqd:B2 (2.97) BS04 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    415 7zqd:B2 (2.97) BS05 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    416 7zqd:B2 (2.97) BS06 SF4 1.97.1.12 GO:0000287 ... P09144 36229605
    417 7zqd:B2 (2.97) BS07 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    418 7zqd:B2 (2.97) BS08 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    419 7zqd:B2 (2.97) BS09 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    420 7zqd:B2 (2.97) BS10 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    421 7zqd:B2 (2.97) BS11 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    422 7zqd:B2 (2.97) BS12 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    423 7zqd:B2 (2.97) BS13 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    424 7zqd:B2 (2.97) BS14 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    425 7zqd:B2 (2.97) BS15 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    426 7zqd:B2 (2.97) BS16 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    427 7zqd:B2 (2.97) BS17 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    428 7zqd:B2 (2.97) BS18 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    429 7zqd:B2 (2.97) BS19 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    430 7zqd:B2 (2.97) BS20 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    431 7zqd:B2 (2.97) BS21 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    432 7zqd:B2 (2.97) BS22 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    433 7zqd:B2 (2.97) BS23 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    434 7zqd:B2 (2.97) BS24 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    435 7zqd:B2 (2.97) BS25 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    436 7zqd:B2 (2.97) BS26 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    437 7zqd:B2 (2.97) BS27 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    438 7zqd:B2 (2.97) BS28 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    439 7zqd:B2 (2.97) BS29 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    440 7zqd:B2 (2.97) BS30 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    441 7zqd:B2 (2.97) BS31 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    442 7zqd:B2 (2.97) BS32 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    443 7zqd:B2 (2.97) BS33 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    444 7zqd:B2 (2.97) BS34 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    445 7zqd:B2 (2.97) BS35 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    446 7zqd:B2 (2.97) BS36 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    447 7zqd:B2 (2.97) BS37 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    448 7zqd:B2 (2.97) BS38 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    449 7zqd:B2 (2.97) BS39 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    450 7zqd:B2 (2.97) BS40 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    451 7zqd:B2 (2.97) BS41 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    452 7zqd:B2 (2.97) BS42 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    453 7zqd:B2 (2.97) BS43 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    454 7zqd:B2 (2.97) BS44 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    455 7zqd:B2 (2.97) BS45 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    456 7zqd:B2 (2.97) BS46 PQN 1.97.1.12 GO:0000287 ... P09144 36229605
    457 7zqd:B2 (2.97) BS47 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    458 7zqd:B2 (2.97) BS48 CLA 1.97.1.12 GO:0000287 ... P09144 36229605
    459 7zqd:C (2.97) BS01 SF4 1.97.1.12 GO:0009055 ... Q00914 36229605
    460 7zqd:C (2.97) BS02 SF4 1.97.1.12 GO:0009055 ... Q00914 36229605
    461 7zqd:C2 (2.97) BS01 SF4 1.97.1.12 GO:0009055 ... Q00914 36229605
    462 7zqd:C2 (2.97) BS02 SF4 1.97.1.12 GO:0009055 ... Q00914 36229605
    463 7zqd:F (2.97) BS01 CLA ? GO:0005515 ... P12356 36229605
    464 7zqd:F (2.97) BS02 CLA ? GO:0005515 ... P12356 36229605
    465 7zqd:F (2.97) BS03 CLA ? GO:0005515 ... P12356 36229605
    466 7zqd:F (2.97) BS04 CLA ? GO:0005515 ... P12356 36229605
    467 7zqd:F (2.97) BS05 CLA ? GO:0005515 ... P12356 36229605
    468 7zqd:F2 (2.97) BS01 CLA ? GO:0005515 ... P12356 36229605
    469 7zqd:F2 (2.97) BS02 CLA ? GO:0005515 ... P12356 36229605
    470 7zqd:F2 (2.97) BS03 CLA ? GO:0005515 ... P12356 36229605
    471 7zqd:F2 (2.97) BS04 CLA ? GO:0005515 ... P12356 36229605
    472 7zqd:F2 (2.97) BS05 CLA ? GO:0005515 ... P12356 36229605
    473 7zqd:G (2.97) BS01 CLA ? GO:0009507 ... P14224 36229605
    474 7zqd:G (2.97) BS02 CLA ? GO:0009507 ... P14224 36229605
    475 7zqd:G (2.97) BS03 CLA ? GO:0009507 ... P14224 36229605
    476 7zqd:G2 (2.97) BS01 CLA ? GO:0009507 ... P14224 36229605
    477 7zqd:G2 (2.97) BS02 CLA ? GO:0009507 ... P14224 36229605
    478 7zqd:G2 (2.97) BS03 CLA ? GO:0009507 ... P14224 36229605
    479 7zqd:I (2.97) BS01 CLA ? GO:0009522 ... A8IFG7 36229605
    480 7zqd:I2 (2.97) BS01 CLA ? GO:0009522 ... A8IFG7 36229605
    481 7zqd:I2 (2.97) BS02 CLA ? GO:0009522 ... A8IFG7 36229605
    482 7zqd:J (2.97) BS01 CLA ? GO:0009507 ... P59777 36229605
    483 7zqd:J (2.97) BS02 CLA ? GO:0009507 ... P59777 36229605
    484 7zqd:J (2.97) BS03 CLA ? GO:0009507 ... P59777 36229605
    485 7zqd:J (2.97) BS04 CLA ? GO:0009507 ... P59777 36229605
    486 7zqd:J (2.97) BS05 CLA ? GO:0009507 ... P59777 36229605
    487 7zqd:J2 (2.97) BS01 CLA ? GO:0009507 ... P59777 36229605
    488 7zqd:J2 (2.97) BS02 CLA ? GO:0009507 ... P59777 36229605
    489 7zqd:J2 (2.97) BS03 CLA ? GO:0009507 ... P59777 36229605
    490 7zqd:J2 (2.97) BS04 CLA ? GO:0009507 ... P59777 36229605
    491 7zqd:J2 (2.97) BS05 CLA ? GO:0009507 ... P59777 36229605
    492 7zqd:K (2.97) BS01 CLA ? GO:0009507 ... P14225 36229605
    493 7zqd:K (2.97) BS02 CLA ? GO:0009507 ... P14225 36229605
    494 7zqd:K (2.97) BS03 CLA ? GO:0009507 ... P14225 36229605
    495 7zqd:K (2.97) BS04 CLA ? GO:0009507 ... P14225 36229605
    496 7zqd:K (2.97) BS05 CLA ? GO:0009507 ... P14225 36229605
    497 7zqd:K (2.97) BS06 CLA ? GO:0009507 ... P14225 36229605
    498 7zqd:K (2.97) BS07 CLA ? GO:0009507 ... P14225 36229605
    499 7zqd:K2 (2.97) BS01 CLA ? GO:0009507 ... P14225 36229605
    500 7zqd:K2 (2.97) BS02 CLA ? GO:0009507 ... P14225 36229605
    501 7zqd:K2 (2.97) BS03 CLA ? GO:0009507 ... P14225 36229605
    502 7zqd:K2 (2.97) BS04 CLA ? GO:0009507 ... P14225 36229605
    503 7zqd:K2 (2.97) BS05 CLA ? GO:0009507 ... P14225 36229605
    504 7zqd:K2 (2.97) BS06 CLA ? GO:0009507 ... P14225 36229605
    505 7zqd:K2 (2.97) BS07 CLA ? GO:0009507 ... P14225 36229605
    506 7zqd:L (2.97) BS01 CLA ? GO:0009522 ... A8IL32 36229605
    507 7zqd:L (2.97) BS02 CLA ? GO:0009522 ... A8IL32 36229605
    508 7zqd:L (2.97) BS03 CLA ? GO:0009522 ... A8IL32 36229605
    509 7zqd:L (2.97) BS04 CLA ? GO:0009522 ... A8IL32 36229605
    510 7zqd:L (2.97) BS05 CLA ? GO:0009522 ... A8IL32 36229605
    511 7zqd:L2 (2.97) BS01 CLA ? GO:0009522 ... A8IL32 36229605
    512 7zqd:L2 (2.97) BS02 CLA ? GO:0009522 ... A8IL32 36229605
    513 7zqd:L2 (2.97) BS03 CLA ? GO:0009522 ... A8IL32 36229605
    514 7zqd:L2 (2.97) BS04 CLA ? GO:0009522 ... A8IL32 36229605
    515 7zqd:L2 (2.97) BS05 CLA ? GO:0009522 ... A8IL32 36229605
    516 7zqd:Z (2.97) BS01 CHL ? GO:0009416 ... Q05093 36229605
    517 7zqd:Z (2.97) BS02 CLA ? GO:0009416 ... Q05093 36229605
    518 7zqd:Z (2.97) BS03 CLA ? GO:0009416 ... Q05093 36229605
    519 7zqd:Z (2.97) BS04 CLA ? GO:0009416 ... Q05093 36229605
    520 7zqd:Z (2.97) BS05 CHL ? GO:0009416 ... Q05093 36229605
    521 7zqd:Z (2.97) BS06 CHL ? GO:0009416 ... Q05093 36229605
    522 7zqd:Z (2.97) BS07 CLA ? GO:0009416 ... Q05093 36229605
    523 7zqd:Z (2.97) BS08 CLA ? GO:0009416 ... Q05093 36229605
    524 7zqd:Z (2.97) BS09 CLA ? GO:0009416 ... Q05093 36229605
    525 7zqd:Z (2.97) BS10 CLA ? GO:0009416 ... Q05093 36229605
    526 7zqd:Z (2.97) BS11 CLA ? GO:0009416 ... Q05093 36229605
    527 7zqd:Z (2.97) BS12 CLA ? GO:0009416 ... Q05093 36229605
    528 7zqd:Z (2.97) BS13 CLA ? GO:0009416 ... Q05093 36229605
    529 7zqd:Z (2.97) BS14 CLA ? GO:0009416 ... Q05093 36229605
    530 7zqd:Z2 (2.97) BS01 CHL ? GO:0009416 ... Q05093 36229605
    531 7zqd:Z2 (2.97) BS02 CLA ? GO:0009416 ... Q05093 36229605
    532 7zqd:Z2 (2.97) BS03 CLA ? GO:0009416 ... Q05093 36229605
    533 7zqd:Z2 (2.97) BS04 CLA ? GO:0009416 ... Q05093 36229605
    534 7zqd:Z2 (2.97) BS05 CHL ? GO:0009416 ... Q05093 36229605
    535 7zqd:Z2 (2.97) BS06 CHL ? GO:0009416 ... Q05093 36229605
    536 7zqd:Z2 (2.97) BS07 CLA ? GO:0009416 ... Q05093 36229605
    537 7zqd:Z2 (2.97) BS08 CLA ? GO:0009416 ... Q05093 36229605
    538 7zqd:Z2 (2.97) BS09 CLA ? GO:0009416 ... Q05093 36229605
    539 7zqd:Z2 (2.97) BS10 CLA ? GO:0009416 ... Q05093 36229605
    540 7zqd:Z2 (2.97) BS11 CLA ? GO:0009416 ... Q05093 36229605
    541 7zqd:Z2 (2.97) BS12 CLA ? GO:0009416 ... Q05093 36229605
    542 7zqd:Z2 (2.97) BS13 CLA ? GO:0009416 ... Q05093 36229605
    543 7zqd:Z2 (2.97) BS14 CLA ? GO:0009416 ... Q05093 36229605
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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