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BioLiP
Download all results in tab-seperated text for 105 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7z3o:A (3.3) BS01 rna ? GO:0001934 ... G0S9U0 37081320
    2 7z3o:B (3.3) BS01 rna ? GO:0003676 ... G0S428 37081320
    3 7z3o:C (3.3) BS01 rna ? GO:0005515 ... G0RYD6 37081320
    4 7z3o:C (3.3) BS02 rna ? GO:0005515 ... G0RYD6 37081320
    5 7z3o:D (3.3) BS01 ATP ? GO:0005515 ... G0RZX9 37081320
    6 7z3o:LA (3.3) BS01 rna ? GO:0002181 ... G0S4P8 37081320
    7 7z3o:LB (3.3) BS01 rna ? GO:0003723 ... G0RXW1 37081320
    8 7z3o:LB (3.3) BS02 MG ? GO:0003723 ... G0RXW1 37081320
    9 7z3o:LC (3.3) BS01 rna ? GO:0003723 ... G0SFC3 37081320
    10 7z3o:LC (3.3) BS02 rna ? GO:0003723 ... G0SFC3 37081320
    11 7z3o:LD (3.3) BS01 rna ? GO:0000027 ... G0SEG2 37081320
    12 7z3o:LD (3.3) BS02 rna ? GO:0000027 ... G0SEG2 37081320
    13 7z3o:LE (3.3) BS01 rna ? GO:0000027 ... G0S0D6 37081320
    14 7z3o:LF (3.3) BS01 rna ? GO:0000463 ... G0SFL0 37081320
    15 7z3o:LG (3.3) BS01 rna ? GO:0000470 ... G0SAJ9 37081320
    16 7z3o:LG (3.3) BS02 rna ? GO:0000470 ... G0SAJ9 37081320
    17 7z3o:LH (3.3) BS01 rna N/A GO:0003735 ... N/A 37081320
    18 7z3o:LI (3.3) BS01 rna ? GO:0000027 ... G0SEI1 37081320
    19 7z3o:LI (3.3) BS02 rna ? GO:0000027 ... G0SEI1 37081320
    20 7z3o:LJ (3.3) BS01 rna ? GO:0003723 ... G0SHQ2 37081320
    21 7z3o:LJ (3.3) BS02 rna ? GO:0003723 ... G0SHQ2 37081320
    22 7z3o:LK (3.3) BS01 rna ? GO:0003735 ... G0SGH8 37081320
    23 7z3o:LL (3.3) BS01 rna ? GO:0003723 ... G0S992 37081320
    24 7z3o:LM (3.3) BS01 rna ? GO:0003723 ... G0S1R0 37081320
    25 7z3o:LN (3.3) BS01 rna ? GO:0002181 ... G0RZ88 37081320
    26 7z3o:LN (3.3) BS02 rna ? GO:0002181 ... G0RZ88 37081320
    27 7z3o:LO (3.3) BS01 rna ? GO:0003729 ... G0SH61 37081320
    28 7z3o:LP (3.3) BS01 rna ? GO:0002181 ... G0SGY1 37081320
    29 7z3o:LP (3.3) BS02 rna ? GO:0002181 ... G0SGY1 37081320
    30 7z3o:LQ (3.3) BS01 rna ? GO:0003723 ... G0S9B5 37081320
    31 7z3o:LR (3.3) BS01 rna ? GO:0003723 ... G0S9T3 37081320
    32 7z3o:LR (3.3) BS02 rna ? GO:0003723 ... G0S9T3 37081320
    33 7z3o:LS (3.3) BS01 rna ? GO:0003735 ... G0SCE2 37081320
    34 7z3o:LS (3.3) BS02 rna ? GO:0003735 ... G0SCE2 37081320
    35 7z3o:LT (3.3) BS01 rna ? GO:0003735 ... G0S0Z3 37081320
    36 7z3o:LU (3.3) BS01 rna ? GO:0002181 ... G0SDS8 37081320
    37 7z3o:LV (3.3) BS01 rna ? GO:0003735 ... G0SI44 37081320
    38 7z3o:LW (3.3) BS01 rna N/A N/A N/A 37081320
    39 7z3o:LW (3.3) BS02 rna N/A N/A N/A 37081320
    40 7z3o:LX (3.3) BS01 rna ? GO:0000027 ... G0S507 37081320
    41 7z3o:LX (3.3) BS02 rna ? GO:0000027 ... G0S507 37081320
    42 7z3o:LY (3.3) BS01 rna ? GO:0002181 ... G0RYN9 37081320
    43 7z3o:LY (3.3) BS02 rna ? GO:0002181 ... G0RYN9 37081320
    44 7z3o:LZ (3.3) BS01 rna ? GO:0003735 ... G0RZE9 37081320
    45 7z3o:La (3.3) BS01 rna N/A GO:0003735 ... N/A 37081320
    46 7z3o:Lb (3.3) BS01 rna N/A GO:0003735 ... N/A 37081320
    47 7z3o:Lc (3.3) BS01 rna ? GO:0003723 ... G0SEI0 37081320
    48 7z3o:Ld (3.3) BS01 rna ? GO:0002181 ... G0SD68 37081320
    49 7z3o:Le (3.3) BS01 rna ? GO:0003735 ... G0S6V4 37081320
    50 7z3o:Lf (3.3) BS01 rna ? GO:0002181 ... G0SCL3 37081320
    51 7z3o:Lg (3.3) BS01 rna ? GO:0003735 ... G0SFN0 37081320
    52 7z3o:Lg (3.3) BS02 ZN ? GO:0003735 ... G0SFN0 37081320
    53 7z3o:Lh (3.3) BS01 rna 2.4.99.18 GO:0000463 ... G0S0D7 37081320
    54 7z3o:Lh (3.3) BS02 rna 2.4.99.18 GO:0000463 ... G0S0D7 37081320
    55 7z3o:Li (3.3) BS01 rna ? GO:0002181 ... G0SBN1 37081320
    56 7z3o:Lj (3.3) BS01 rna ? GO:0003723 ... G0S101 37081320
    57 7z3o:Lj (3.3) BS02 rna ? GO:0003723 ... G0S101 37081320
    58 7z3o:Lj (3.3) BS03 ZN ? GO:0003723 ... G0S101 37081320
    59 7z3o:Lk (3.3) BS01 rna N/A GO:0003735 ... N/A 37081320
    60 7z3o:Ll (3.3) BS01 rna N/A GO:0003735 ... N/A 37081320
    61 7z3o:Ll (3.3) BS02 rna N/A GO:0003735 ... N/A 37081320
    62 7z3o:Lm (3.3) BS01 rna ? GO:0003735 ... G0S8G4 37081320
    63 7z3o:Lm (3.3) BS02 ZN ? GO:0003735 ... G0S8G4 37081320
    64 7z3o:Lo (3.3) BS01 rna ? GO:0003735 ... G0SBZ6 37081320
    65 7z3o:Lo (3.3) BS02 ZN ? GO:0003735 ... G0SBZ6 37081320
    66 7z3o:Lp (3.3) BS01 rna ? GO:0003735 ... G0S6B0 37081320
    67 7z3o:Lp (3.3) BS02 ZN ? GO:0003735 ... G0S6B0 37081320
    68 7z3o:Lq (3.3) BS01 rna ? GO:0003735 ... G0SHJ6 37081320
    69 7z3o:Ls (3.3) BS01 rna ? GO:0000027 ... G0SGP3 37081320
    70 7z3o:SA (3.3) BS01 rna ? GO:0000028 ... G0RYF9 37081320
    71 7z3o:SB (3.3) BS01 rna ? GO:0003735 ... G0S7T8 37081320
    72 7z3o:SB (3.3) BS02 rna ? GO:0003735 ... G0S7T8 37081320
    73 7z3o:SC (3.3) BS01 rna ? GO:0003723 ... G0SAV4 37081320
    74 7z3o:SD (3.3) BS01 rna ? GO:0003723 ... G0S6I7 37081320
    75 7z3o:SE (3.3) BS01 rna ? GO:0003723 ... G0S1A6 37081320
    76 7z3o:SF (3.3) BS01 rna ? GO:0000028 ... G0S1Z0 37081320
    77 7z3o:SG (3.3) BS01 rna ? GO:0003735 ... G0RY43 37081320
    78 7z3o:SH (3.3) BS01 rna ? GO:0003735 ... G0S8C4 37081320
    79 7z3o:SI (3.3) BS01 rna ? GO:0000462 ... G0RY45 37081320
    80 7z3o:SI (3.3) BS02 rna ? GO:0000462 ... G0RY45 37081320
    81 7z3o:SJ (3.3) BS01 rna ? GO:0003723 ... G0S0Z4 37081320
    82 7z3o:SK (3.3) BS01 rna ? GO:0003723 ... G0RZD8 37081320
    83 7z3o:SL (3.3) BS01 rna ? GO:0003735 ... G0SF00 37081320
    84 7z3o:SM (3.3) BS01 rna ? GO:0003735 ... G0SHH9 37081320
    85 7z3o:SN (3.3) BS01 rna ? GO:0003735 ... G0RZM9 37081320
    86 7z3o:SO (3.3) BS01 rna ? GO:0000028 ... G0SFL1 37081320
    87 7z3o:SP (3.3) BS01 rna ? GO:0000028 ... G0S084 37081320
    88 7z3o:SQ (3.3) BS01 rna ? GO:0000462 ... G0SBR7 37081320
    89 7z3o:SR (3.3) BS01 rna ? GO:0003735 ... G0S871 37081320
    90 7z3o:SS (3.3) BS01 rna ? GO:0003676 ... G0S6J7 37081320
    91 7z3o:ST (3.3) BS01 rna ? GO:0000028 ... G0SFK8 37081320
    92 7z3o:SU (3.3) BS01 rna ? GO:0003723 ... G0S379 37081320
    93 7z3o:SW (3.3) BS01 rna ? GO:0003735 ... G0SHI0 37081320
    94 7z3o:SX (3.3) BS01 rna ? GO:0003735 ... G0RY17 37081320
    95 7z3o:SY (3.3) BS01 rna ? GO:0003735 ... P0CU28 37081320
    96 7z3o:SZ (3.3) BS01 rna ? GO:0003735 ... G0S1Y9 37081320
    97 7z3o:Sa (3.3) BS01 rna ? GO:0003729 ... G0S2X4 37081320
    98 7z3o:Sa (3.3) BS02 ZN ? GO:0003729 ... G0S2X4 37081320
    99 7z3o:Sb (3.3) BS01 rna ? GO:0000028 ... G0S1S4 37081320
    100 7z3o:Sb (3.3) BS02 ZN ? GO:0000028 ... G0S1S4 37081320
    101 7z3o:Sc (3.3) BS01 rna ? GO:0000028 ... G0S9M9 37081320
    102 7z3o:Sd (3.3) BS01 rna N/A GO:0003735 ... N/A 37081320
    103 7z3o:Sd (3.3) BS02 ZN N/A GO:0003735 ... N/A 37081320
    104 7z3o:Se (3.3) BS01 rna N/A GO:0003735 ... N/A 37081320
    105 7z3o:Sf (3.3) BS01 rna ? GO:0003735 ... G0S2X5 37081320
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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