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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7y7d:0 (2.58) BS01 rna ? GO:0000027 ... P0A7N9 37992713
    2 7y7d:1 (2.58) BS01 rna ? GO:0002181 ... P0A7P5 37992713
    3 7y7d:2 (2.58) BS01 rna ? GO:0002181 ... P0A7Q1 37992713
    4 7y7d:3 (2.58) BS01 rna ? GO:0002181 ... P0A7Q6 37992713
    5 7y7d:4 (2.58) BS01 rna ? GO:0002181 ... P0A7M9 37992713
    6 7y7d:B (2.58) BS01 rna ? GO:0000028 ... P0A7V0 37992713
    7 7y7d:C (2.58) BS01 rna ? GO:0000028 ... P0A7V3 37992713
    8 7y7d:D (2.58) BS01 rna ? GO:0000028 ... P0A7V8 37992713
    9 7y7d:E (2.58) BS01 rna ? GO:0000028 ... P0A7W1 37992713
    10 7y7d:F (2.58) BS01 rna ? GO:0002181 ... P02358 37992713
    11 7y7d:G (2.58) BS01 rna ? GO:0000028 ... P02359 37992713
    12 7y7d:H (2.58) BS01 rna ? GO:0000028 ... P0A7W7 37992713
    13 7y7d:I (2.58) BS01 rna ? GO:0000049 ... P0A7X3 37992713
    14 7y7d:I (2.58) BS02 rna ? GO:0000049 ... P0A7X3 37992713
    15 7y7d:J (2.58) BS01 rna ? GO:0000049 ... P0A7R5 37992713
    16 7y7d:K (2.58) BS01 rna ? GO:0002181 ... P0A7R9 37992713
    17 7y7d:L (2.58) BS01 rna ? GO:0000049 ... P0A7S3 37992713
    18 7y7d:M (2.58) BS01 rna ? GO:0000049 ... P0A7S9 37992713
    19 7y7d:M (2.58) BS02 rna ? GO:0000049 ... P0A7S9 37992713
    20 7y7d:N (2.58) BS01 rna ? GO:0000028 ... P0AG59 37992713
    21 7y7d:O (2.58) BS01 rna ? GO:0000028 ... P0ADZ4 37992713
    22 7y7d:O (2.58) BS02 rna ? GO:0000028 ... P0ADZ4 37992713
    23 7y7d:P (2.58) BS01 rna ? GO:0000028 ... P0A7T3 37992713
    24 7y7d:Q (2.58) BS01 rna ? GO:0000028 ... P0AG63 37992713
    25 7y7d:R (2.58) BS01 rna ? GO:0002181 ... P0A7T7 37992713
    26 7y7d:S (2.58) BS01 rna ? GO:0000028 ... P0A7U3 37992713
    27 7y7d:T (2.58) BS01 rna ? GO:0000028 ... P0A7U7 37992713
    28 7y7d:U (2.58) BS01 rna ? GO:0000028 ... P68679 37992713
    29 7y7d:c (2.58) BS01 rna ? GO:0000027 ... P60422 37992713
    30 7y7d:d (2.58) BS01 rna ? GO:0000027 ... P60438 37992713
    31 7y7d:e (2.58) BS01 rna ? GO:0001070 ... P60723 37992713
    32 7y7d:f (2.58) BS01 rna ? GO:0000027 ... P62399 37992713
    33 7y7d:f (2.58) BS02 rna ? GO:0000027 ... P62399 37992713
    34 7y7d:f (2.58) BS03 rna ? GO:0000027 ... P62399 37992713
    35 7y7d:g (2.58) BS01 rna ? GO:0000027 ... P0AG55 37992713
    36 7y7d:h (2.58) BS01 rna ? GO:0002181 ... P0A7R1 37992713
    37 7y7d:i (2.58) BS01 rna ? GO:0002181 ... P0AA10 37992713
    38 7y7d:j (2.58) BS01 rna ? GO:0002181 ... P0ADY3 37992713
    39 7y7d:j (2.58) BS02 rna ? GO:0002181 ... P0ADY3 37992713
    40 7y7d:k (2.58) BS01 rna ? GO:0002181 ... P02413 37992713
    41 7y7d:l (2.58) BS01 rna ? GO:0000027 ... P0ADY7 37992713
    42 7y7d:l (2.58) BS02 rna ? GO:0000027 ... P0ADY7 37992713
    43 7y7d:l (2.58) BS03 rna ? GO:0000027 ... P0ADY7 37992713
    44 7y7d:m (2.58) BS01 rna ? GO:0000027 ... P0AG44 37992713
    45 7y7d:n (2.58) BS01 rna ? GO:0002181 ... P0C018 37992713
    46 7y7d:n (2.58) BS02 rna ? GO:0002181 ... P0C018 37992713
    47 7y7d:o (2.58) BS01 rna ? GO:0000027 ... P0A7K6 37992713
    48 7y7d:o (2.58) BS02 rna ? GO:0000027 ... P0A7K6 37992713
    49 7y7d:p (2.58) BS01 rna ? GO:0000027 ... P0A7L3 37992713
    50 7y7d:q (2.58) BS01 rna ? GO:0002181 ... P0AG48 37992713
    51 7y7d:r (2.58) BS01 rna ? GO:0002181 ... P61175 37992713
    52 7y7d:s (2.58) BS01 rna ? GO:0000027 ... P0ADZ0 37992713
    53 7y7d:t (2.58) BS01 rna ? GO:0000027 ... P60624 37992713
    54 7y7d:u (2.58) BS01 rna ? GO:0000027 ... P68919 37992713
    55 7y7d:v (2.58) BS01 rna ? GO:0000027 ... P0A7L8 37992713
    56 7y7d:v (2.58) BS02 rna ? GO:0000027 ... P0A7L8 37992713
    57 7y7d:w (2.58) BS01 rna ? GO:0000027 ... P0A7M2 37992713
    58 7y7d:x (2.58) BS01 rna ? GO:0000027 ... P0A7M6 37992713
    59 7y7d:y (2.58) BS01 rna ? GO:0000027 ... P0AG51 37992713
    60 7y7d:z (2.58) BS01 rna ? GO:0000027 ... P0A7N4 37992713
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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