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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7xmb:A (2.2) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 36481732
    2 7xmb:A (2.2) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 36481732
    3 7xmb:A (2.2) BS03 CU 7.1.1.9 GO:0004129 ... P00396 36481732
    4 7xmb:A (2.2) BS04 MG 7.1.1.9 GO:0004129 ... P00396 36481732
    5 7xmb:A (2.2) BS05 J6X 7.1.1.9 GO:0004129 ... P00396 36481732
    6 7xmb:B (2.2) BS01 HEA 7.1.1.9 GO:0004129 ... P00396
    P68530    		 36481732
    7 7xmb:B (2.2) BS02 CUA 7.1.1.9 GO:0004129 ... P00396
    P68530    		 36481732
    8 7xmb:C (2.2) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 36481732
    9 7xmb:F (2.2) BS01 ZN ? GO:0005740 ... P00428 36481732
    10 7xmb:J (2.2) BS01 DMU ? GO:0006123 ... P07470 36481732
    11 7xmb:L (2.2) BS01 J6X ? GO:0006123 ... P00430 36481732
    12 7xmb:M (2.2) BS01 DMU ? GO:0006123 ... P10175 36481732
    13 7xmb:N (2.2) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 36481732
    14 7xmb:N (2.2) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 36481732
    15 7xmb:N (2.2) BS03 CU 7.1.1.9 GO:0004129 ... P00396 36481732
    16 7xmb:N (2.2) BS04 MG 7.1.1.9 GO:0004129 ... P00396 36481732
    17 7xmb:N (2.2) BS05 J6X 7.1.1.9 GO:0004129 ... P00396 36481732
    18 7xmb:O (2.2) BS01 HEA 7.1.1.9 GO:0004129 ... P00396
    P68530    		 36481732
    19 7xmb:O (2.2) BS02 CUA 7.1.1.9 GO:0004129 ... P00396
    P68530    		 36481732
    20 7xmb:P (2.2) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 36481732
    21 7xmb:S (2.2) BS01 ZN ? GO:0005740 ... P00428 36481732
    22 7xmb:W (2.2) BS01 DMU ? GO:0006123 ... P07470 36481732
    23 7xmb:Y (2.2) BS01 J6X ? GO:0006123 ... P00430 36481732
    24 7xmb:Z (2.2) BS01 DMU ? GO:0006123 ... P10175 36481732
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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