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BioLiP
Download all results in tab-seperated text for 17 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7wtm:CA (3.5) BS01 rna ? GO:0000056 ... Q99216 36263816
    2 7wtm:JL (3.5) BS01 rna 2.1.1.183 GO:0000154 ... P41819 36263816
    3 7wtm:SB (3.5) BS01 rna ? GO:0000462 ... P33442 36263816
    4 7wtm:SE (3.5) BS01 rna ? GO:0002181 ... P0CX35 36263816
    5 7wtm:SG (3.5) BS01 rna ? GO:0000462 ... P0CX37 36263816
    6 7wtm:SH (3.5) BS01 rna ? GO:0002181 ... P26786 36263816
    7 7wtm:SI (3.5) BS01 rna ? GO:0000462 ... P0CX39 36263816
    8 7wtm:SJ (3.5) BS01 rna ? GO:0000462 ... O13516 36263816
    9 7wtm:SJ (3.5) BS02 peptide ? GO:0000462 ... O13516 36263816
    10 7wtm:SL (3.5) BS01 rna ? GO:0000028 ... P0CX47 36263816
    11 7wtm:SN (3.5) BS01 rna ? GO:0000462 ... P05756 36263816
    12 7wtm:SO (3.5) BS01 rna ? GO:0000028 ... P06367 36263816
    13 7wtm:SW (3.5) BS01 rna ? GO:0002181 ... P0C0W1 36263816
    14 7wtm:SX (3.5) BS01 rna ? GO:0000462 ... P0CX29 36263816
    15 7wtm:SY (3.5) BS01 rna ? GO:0000462 ... P0CX31 36263816
    16 7wtm:Sb (3.5) BS01 rna ? GO:0000028 ... P35997 36263816
    17 7wtm:Sb (3.5) BS02 ZN ? GO:0000028 ... P35997 36263816
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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