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BioLiP
Download all results in tab-seperated text for 101 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7uck:A (2.8) BS01 rna ? GO:0002181 ... G1TT27 35679869
    2 7uck:A (2.8) BS02 rna ? GO:0002181 ... G1TT27 35679869
    3 7uck:A (2.8) BS03 MG ? GO:0002181 ... G1TT27 35679869
    4 7uck:AA (2.8) BS01 rna ? GO:0003735 ... G1TJH8 35679869
    5 7uck:Aa (2.8) BS01 rna ? GO:0003735 ... G1TFE8 35679869
    6 7uck:Aa (2.8) BS02 ZN ? GO:0003735 ... G1TFE8 35679869
    7 7uck:B (2.8) BS01 rna ? GO:0003723 ... G1TL06 35679869
    8 7uck:BB (2.8) BS01 rna ? GO:0003735 ... G1SS70 35679869
    9 7uck:Bb (2.8) BS01 rna ? GO:0000028 ... G1TZ76 35679869
    10 7uck:C (2.8) BS01 rna ? GO:0003723 ... A0A5F9DCT1 35679869
    11 7uck:CC (2.8) BS01 rna N/A GO:0003723 ... N/A 35679869
    12 7uck:Cc (2.8) BS01 rna ? GO:0000028 ... G1TIB4 35679869
    13 7uck:D (2.8) BS01 rna ? GO:0000027 ... P19949 35679869
    14 7uck:D (2.8) BS02 rna ? GO:0000027 ... P19949 35679869
    15 7uck:DD (2.8) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 35679869
    16 7uck:Dd (2.8) BS01 rna ? GO:0003735 ... G1U7M4 35679869
    17 7uck:Dd (2.8) BS02 ZN ? GO:0003735 ... G1U7M4 35679869
    18 7uck:E (2.8) BS01 rna ? GO:0003735 ... G1SKF7 35679869
    19 7uck:EE (2.8) BS01 rna ? GO:0003723 ... G1TA47 35679869
    20 7uck:Ee (2.8) BS01 rna ? GO:0003735 ... G1T8A2 35679869
    21 7uck:F (2.8) BS01 rna ? GO:0000463 ... G1SV32 35679869
    22 7uck:F (2.8) BS02 rna ? GO:0000463 ... G1SV32 35679869
    23 7uck:FF (2.8) BS01 rna ? GO:0000028 ... G1TFM5 35679869
    24 7uck:FF (2.8) BS02 MG ? GO:0000028 ... G1TFM5 35679869
    25 7uck:G (2.8) BS01 rna N/A GO:0042254 ... N/A 35679869
    26 7uck:G (2.8) BS02 rna N/A GO:0042254 ... N/A 35679869
    27 7uck:GG (2.8) BS01 rna ? GO:0000082 ... G1TM55 35679869
    28 7uck:Gg (2.8) BS01 rna ? GO:0001891 ... G1SJB4 35679869
    29 7uck:H (2.8) BS01 rna ? GO:0002181 ... G1SWI6 35679869
    30 7uck:HH (2.8) BS01 rna N/A GO:0003735 ... N/A 35679869
    31 7uck:I (2.8) BS01 rna ? GO:0000027 ... B7NZQ2 35679869
    32 7uck:I (2.8) BS02 rna ? GO:0000027 ... B7NZQ2 35679869
    33 7uck:II (2.8) BS01 rna ? GO:0000462 ... G1TJW1 35679869
    34 7uck:II (2.8) BS02 rna ? GO:0000462 ... G1TJW1 35679869
    35 7uck:J (2.8) BS01 rna ? GO:0003723 ... G1TUB8 35679869
    36 7uck:J (2.8) BS02 rna ? GO:0003723 ... G1TUB8 35679869
    37 7uck:JJ (2.8) BS01 rna ? GO:0003723 ... B7NZS8 35679869
    38 7uck:KK (2.8) BS01 rna ? N/A G1TPV3 35679869
    39 7uck:L (2.8) BS01 rna N/A GO:0003735 ... N/A 35679869
    40 7uck:L (2.8) BS02 rna N/A GO:0003735 ... N/A 35679869
    41 7uck:LL (2.8) BS01 rna ? GO:0003735 ... G1TRM4 35679869
    42 7uck:LL (2.8) BS02 MG ? GO:0003735 ... G1TRM4 35679869
    43 7uck:M (2.8) BS01 rna ? GO:0003723 ... G1SZ12 35679869
    44 7uck:N (2.8) BS01 rna ? GO:0002181 ... G1T0C1 35679869
    45 7uck:N (2.8) BS02 rna ? GO:0002181 ... G1T0C1 35679869
    46 7uck:NN (2.8) BS01 rna ? GO:0003735 ... G1SP51 35679869
    47 7uck:NN (2.8) BS02 rna ? GO:0003735 ... G1SP51 35679869
    48 7uck:O (2.8) BS01 rna N/A GO:0003735 ... N/A 35679869
    49 7uck:OO (2.8) BS01 rna ? GO:0000028 ... G1T1F0 35679869
    50 7uck:P (2.8) BS01 rna ? GO:0003735 ... G1SCJ6 35679869
    51 7uck:P (2.8) BS02 rna ? GO:0003735 ... G1SCJ6 35679869
    52 7uck:PP (2.8) BS01 rna ? GO:0003723 ... G1U0Q2 35679869
    53 7uck:Q (2.8) BS01 rna N/A GO:0003735 ... N/A 35679869
    54 7uck:QQ (2.8) BS01 rna N/A GO:0003735 ... N/A 35679869
    55 7uck:R (2.8) BS01 rna ? GO:0003723 ... G1TYL6 35679869
    56 7uck:R (2.8) BS02 rna ? GO:0003723 ... G1TYL6 35679869
    57 7uck:RR (2.8) BS01 rna ? GO:0003735 ... G1TU13 35679869
    58 7uck:S (2.8) BS01 rna N/A GO:0003735 ... N/A 35679869
    59 7uck:S (2.8) BS02 rna N/A GO:0003735 ... N/A 35679869
    60 7uck:SS (2.8) BS01 rna ? GO:0003676 ... G1TPG3 35679869
    61 7uck:T (2.8) BS01 rna ? GO:0003735 ... G1SHQ2 35679869
    62 7uck:T (2.8) BS02 rna ? GO:0003735 ... G1SHQ2 35679869
    63 7uck:TT (2.8) BS01 rna N/A GO:0003735 ... N/A 35679869
    64 7uck:U (2.8) BS01 rna N/A GO:0003735 ... N/A 35679869
    65 7uck:UU (2.8) BS01 rna ? GO:0003723 ... G1SIZ2 35679869
    66 7uck:V (2.8) BS01 rna ? GO:0000122 ... G1T6D1 35679869
    67 7uck:W (2.8) BS01 rna ? N/A G1SE28 35679869
    68 7uck:WW (2.8) BS01 rna ? GO:0003735 ... G1TG89 35679869
    69 7uck:X (2.8) BS01 rna N/A GO:0003735 ... N/A 35679869
    70 7uck:X (2.8) BS02 rna N/A GO:0003735 ... N/A 35679869
    71 7uck:XX (2.8) BS01 rna ? GO:0003735 ... G1SZ47 35679869
    72 7uck:Y (2.8) BS01 rna ? GO:0002181 ... G1SQH0 35679869
    73 7uck:Y (2.8) BS02 rna ? GO:0002181 ... G1SQH0 35679869
    74 7uck:YY (2.8) BS01 rna ? GO:0003735 ... G1T3D8 35679869
    75 7uck:Z (2.8) BS01 rna ? GO:0003735 ... G1TXF6 35679869
    76 7uck:ZZ (2.8) BS01 rna ? N/A G1TDB3 35679869
    77 7uck:a (2.8) BS01 rna ? GO:0003735 ... G1SNY0 35679869
    78 7uck:b (2.8) BS01 rna ? GO:0003735 ... G1SGR6 35679869
    79 7uck:c (2.8) BS01 rna ? GO:0003723 ... G1TDL2 35679869
    80 7uck:d (2.8) BS01 rna ? GO:0003735 ... G1SHG0 35679869
    81 7uck:e (2.8) BS01 rna ? GO:0003735 ... G1TUN8 35679869
    82 7uck:f (2.8) BS01 rna ? GO:0000049 ... G1SF08 35679869
    83 7uck:g (2.8) BS01 rna ? GO:0003735 ... G1TXG5 35679869
    84 7uck:g (2.8) BS02 MG ? GO:0003735 ... G1TXG5 35679869
    85 7uck:g (2.8) BS03 ZN ? GO:0003735 ... G1TXG5 35679869
    86 7uck:h (2.8) BS01 rna ? GO:0000463 ... G1SIT5 35679869
    87 7uck:h (2.8) BS02 rna ? GO:0000463 ... G1SIT5 35679869
    88 7uck:i (2.8) BS01 rna ? GO:0002181 ... G1TTQ5 35679869
    89 7uck:j (2.8) BS01 rna ? GO:0003735 ... U3KPD5 35679869
    90 7uck:j (2.8) BS02 rna ? GO:0003735 ... U3KPD5 35679869
    91 7uck:j (2.8) BS03 ZN ? GO:0003735 ... U3KPD5 35679869
    92 7uck:k (2.8) BS01 rna N/A GO:0003735 ... N/A 35679869
    93 7uck:l (2.8) BS01 rna ? GO:0003735 ... G1TTN1 35679869
    94 7uck:l (2.8) BS02 rna ? GO:0003735 ... G1TTN1 35679869
    95 7uck:m (2.8) BS01 rna N/A GO:0003735 ... N/A 35679869
    96 7uck:m (2.8) BS02 ZN N/A GO:0003735 ... N/A 35679869
    97 7uck:o (2.8) BS01 rna ? GO:0003735 ... G1T040 35679869
    98 7uck:o (2.8) BS02 ZN ? GO:0003735 ... G1T040 35679869
    99 7uck:p (2.8) BS01 rna ? GO:0003735 ... G1SY53 35679869
    100 7uck:p (2.8) BS02 ZN ? GO:0003735 ... G1SY53 35679869
    101 7uck:r (2.8) BS01 rna ? GO:0003735 ... G1U7L1 35679869
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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