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BioLiP
Download all results in tab-seperated text for 37 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7u4d:A (8.1) BS01 dna ? GO:0000132 ... P49450 35422519
    2 7u4d:A (8.1) BS02 dna ? GO:0000132 ... P49450 35422519
    3 7u4d:B (8.1) BS01 dna ? GO:0000781 ... P62805 35422519
    4 7u4d:B (8.1) BS02 dna ? GO:0000781 ... P62805 35422519
    5 7u4d:C (8.1) BS01 dna ? GO:0000786 ... Q93077 35422519
    6 7u4d:C (8.1) BS02 dna ? GO:0000786 ... Q93077 35422519
    7 7u4d:D (8.1) BS01 dna ? GO:0000786 ... P62807 35422519
    8 7u4d:D (8.1) BS02 dna ? GO:0000786 ... P62807 35422519
    9 7u4d:E (8.1) BS01 dna ? GO:0000132 ... P49450 35422519
    10 7u4d:E (8.1) BS02 dna ? GO:0000132 ... P49450 35422519
    11 7u4d:F (8.1) BS01 dna ? GO:0000781 ... P62805 35422519
    12 7u4d:F (8.1) BS02 dna ? GO:0000781 ... P62805 35422519
    13 7u4d:G (8.1) BS01 dna ? GO:0000786 ... Q93077 35422519
    14 7u4d:G (8.1) BS02 dna ? GO:0000786 ... Q93077 35422519
    15 7u4d:H (8.1) BS01 dna ? GO:0000786 ... P62807 35422519
    16 7u4d:H (8.1) BS02 dna ? GO:0000786 ... P62807 35422519
    17 7u4d:K (8.1) BS01 dna ? GO:0007059 ... Q96H22 35422519
    18 7u4d:K (8.1) BS02 dna ? GO:0007059 ... Q96H22 35422519
    19 7u4d:K (8.1) BS03 dna ? GO:0007059 ... Q96H22 35422519
    20 7u4d:L (8.1) BS01 dna ? GO:0000132 ... P49450 35422519
    21 7u4d:L (8.1) BS02 dna ? GO:0000132 ... P49450 35422519
    22 7u4d:M (8.1) BS01 dna ? GO:0000781 ... P62805 35422519
    23 7u4d:M (8.1) BS02 dna ? GO:0000781 ... P62805 35422519
    24 7u4d:N (8.1) BS01 dna ? GO:0000786 ... Q93077 35422519
    25 7u4d:N (8.1) BS02 dna ? GO:0000786 ... Q93077 35422519
    26 7u4d:O (8.1) BS01 dna ? GO:0000786 ... P62807 35422519
    27 7u4d:O (8.1) BS02 dna ? GO:0000786 ... P62807 35422519
    28 7u4d:P (8.1) BS01 dna ? GO:0000132 ... P49450 35422519
    29 7u4d:P (8.1) BS02 dna ? GO:0000132 ... P49450 35422519
    30 7u4d:Q (8.1) BS01 dna ? GO:0000781 ... P62805 35422519
    31 7u4d:Q (8.1) BS02 dna ? GO:0000781 ... P62805 35422519
    32 7u4d:R (8.1) BS01 dna ? GO:0000786 ... Q93077 35422519
    33 7u4d:R (8.1) BS02 dna ? GO:0000786 ... Q93077 35422519
    34 7u4d:S (8.1) BS01 dna ? GO:0000786 ... P62807 35422519
    35 7u4d:S (8.1) BS02 dna ? GO:0000786 ... P62807 35422519
    36 7u4d:V (8.1) BS01 dna ? GO:0007059 ... Q96H22 35422519
    37 7u4d:V (8.1) BS02 dna ? GO:0007059 ... Q96H22 35422519
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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