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BioLiP
Download all results in tab-seperated text for 53 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7qgu:C (4.75) BS01 rna ? GO:0002181 ... A0A063XCB6 35264790
    2 7qgu:D (4.75) BS01 rna ? GO:0003735 ... A0A063X745 35264790
    3 7qgu:E (4.75) BS01 rna ? GO:0003735 ... A0A063X8U6 35264790
    4 7qgu:F (4.75) BS01 rna ? GO:0000049 ... A0A063XB64 35264790
    5 7qgu:F (4.75) BS02 rna ? GO:0000049 ... A0A063XB64 35264790
    6 7qgu:F (4.75) BS03 rna ? GO:0000049 ... A0A063XB64 35264790
    7 7qgu:G (4.75) BS01 rna N/A GO:0003735 ... N/A 35264790
    8 7qgu:H (4.75) BS01 rna ? GO:0003735 ... A0A063X7V1 35264790
    9 7qgu:I (4.75) BS01 rna ? GO:0003735 ... A0A0M0KW96 35264790
    10 7qgu:J (4.75) BS01 rna ? GO:0003729 ... A0A063XCH0 35264790
    11 7qgu:K (4.75) BS01 rna ? GO:0003735 ... A0A063X754 35264790
    12 7qgu:K (4.75) BS02 rna ? GO:0003735 ... A0A063X754 35264790
    13 7qgu:L (4.75) BS01 rna ? GO:0003735 ... A0A063XCP1 35264790
    14 7qgu:M (4.75) BS01 rna ? GO:0000049 ... A0A063XB41 35264790
    15 7qgu:M (4.75) BS02 rna ? GO:0000049 ... A0A063XB41 35264790
    16 7qgu:N (4.75) BS01 rna ? GO:0003735 ... A0A063XCG5 35264790
    17 7qgu:O (4.75) BS01 rna ? GO:0003735 ... F5HRS9 35264790
    18 7qgu:O (4.75) BS02 rna ? GO:0003735 ... F5HRS9 35264790
    19 7qgu:P (4.75) BS01 rna ? GO:0003735 ... A0A063XHU6 35264790
    20 7qgu:P (4.75) BS02 rna ? GO:0003735 ... A0A063XHU6 35264790
    21 7qgu:Q (4.75) BS01 rna ? GO:0000027 ... A0A063XFC1 35264790
    22 7qgu:R (4.75) BS01 rna ? GO:0003723 ... A0A063XIS2 35264790
    23 7qgu:S (4.75) BS01 rna ? GO:0003735 ... F5HRT3 35264790
    24 7qgu:T (4.75) BS01 rna ? GO:0000027 ... A0A063XB36 35264790
    25 7qgu:U (4.75) BS01 rna ? GO:0003723 ... F5HRS7 35264790
    26 7qgu:V (4.75) BS01 rna ? GO:0003735 ... A0A063XF22 35264790
    27 7qgu:V (4.75) BS02 rna ? GO:0003735 ... A0A063XF22 35264790
    28 7qgu:X (4.75) BS01 rna ? GO:0003735 ... A0A063XEI0 35264790
    29 7qgu:Y (4.75) BS01 rna ? GO:0003735 ... A0A063XHT6 35264790
    30 7qgu:Z (4.75) BS01 rna ? GO:0003735 ... F5HRV8 35264790
    31 7qgu:a (4.75) BS01 rna ? GO:0003735 ... F5HRU6 35264790
    32 7qgu:b (4.75) BS01 rna ? GO:0003735 ... A0A3A5I502 35264790
    33 7qgu:c (4.75) BS01 rna ? GO:0003735 ... A0A3A5I267 35264790
    34 7qgu:d (4.75) BS01 rna ? GO:0003735 ... A0A063XCT1 35264790
    35 7qgu:e (4.75) BS01 rna ? GO:0003735 ... A0A063XFQ7 35264790
    36 7qgu:f (4.75) BS01 rna ? GO:0003735 ... A0A199WAC7 35264790
    37 7qgu:h (4.75) BS01 rna ? GO:0003676 ... A0A3N6BZP3 35264790
    38 7qgu:i (4.75) BS01 rna ? GO:0003723 ... A0A063XDX5 35264790
    39 7qgu:j (4.75) BS01 rna ? GO:0003723 ... A0A1A0G5K9 35264790
    40 7qgu:k (4.75) BS01 rna ? GO:0003735 ... A0A063XCU1 35264790
    41 7qgu:l (4.75) BS01 rna ? GO:0000028 ... A0A063X741 35264790
    42 7qgu:m (4.75) BS01 rna ? GO:0003735 ... A0A063XCN0 35264790
    43 7qgu:n (4.75) BS01 rna ? GO:0003723 ... A0A063XCS1 35264790
    44 7qgu:o (4.75) BS01 rna ? GO:0000049 ... F5HRV5 35264790
    45 7qgu:p (4.75) BS01 rna ? GO:0003735 ... A0A7U5HS75 35264790
    46 7qgu:q (4.75) BS01 rna ? GO:0000049 ... A0A063XCJ2 35264790
    47 7qgu:r (4.75) BS01 rna ? GO:0000049 ... A0A063X7B3 35264790
    48 7qgu:s (4.75) BS01 rna ? GO:0003735 ... F5HRV2 35264790
    49 7qgu:t (4.75) BS01 rna ? GO:0003735 ... A0A2J0WEG5 35264790
    50 7qgu:u (4.75) BS01 rna ? GO:0003735 ... A0A063XHU4 35264790
    51 7qgu:v (4.75) BS01 rna ? GO:0003735 ... A0A063XCK9 35264790
    52 7qgu:x (4.75) BS01 rna ? GO:0000028 ... F5HRU0 35264790
    53 7qgu:y (4.75) BS01 rna ? GO:0003723 ... A0A086DNG8 35264790
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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