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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 599 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 7pin:d (3.6) BS10 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    402 7pin:d1 (3.6) BS01 peptide 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    403 7pin:d1 (3.6) BS02 FE2 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    404 7pin:d1 (3.6) BS03 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    405 7pin:d1 (3.6) BS04 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    406 7pin:d1 (3.6) BS05 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    407 7pin:d1 (3.6) BS06 PHO 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    408 7pin:d1 (3.6) BS07 PHO 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    409 7pin:d1 (3.6) BS08 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    410 7pin:d1 (3.6) BS09 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    411 7pin:d1 (3.6) BS10 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    412 7pin:e (3.6) BS01 peptide ? GO:0005506 ... D0FY01 36799903
    413 7pin:e (3.6) BS02 HEM ? GO:0005506 ... D0FY01 36799903
    414 7pin:e (3.6) BS03 4RF ? GO:0005506 ... D0FY01 36799903
    415 7pin:e1 (3.6) BS01 peptide ? GO:0005506 ... D0FY01 36799903
    416 7pin:e1 (3.6) BS02 HEM ? GO:0005506 ... D0FY01 36799903
    417 7pin:e1 (3.6) BS03 4RF ? GO:0005506 ... D0FY01 36799903
    418 7pin:f (3.6) BS01 HEM ? GO:0009523 ... A0A1C8XRP4 36799903
    419 7pin:f1 (3.6) BS01 HEM ? GO:0009523 ... A0A1C8XRP4 36799903
    420 7pin:g (3.6) BS01 CHL ? GO:0009765 ... A1XKU7 36799903
    421 7pin:g (3.6) BS02 CLA ? GO:0009765 ... A1XKU7 36799903
    422 7pin:g (3.6) BS03 CLA ? GO:0009765 ... A1XKU7 36799903
    423 7pin:g (3.6) BS04 CLA ? GO:0009765 ... A1XKU7 36799903
    424 7pin:g (3.6) BS05 CHL ? GO:0009765 ... A1XKU7 36799903
    425 7pin:g (3.6) BS06 CHL ? GO:0009765 ... A1XKU7 36799903
    426 7pin:g (3.6) BS07 CHL ? GO:0009765 ... A1XKU7 36799903
    427 7pin:g (3.6) BS08 CHL ? GO:0009765 ... A1XKU7 36799903
    428 7pin:g (3.6) BS09 CHL ? GO:0009765 ... A1XKU7 36799903
    429 7pin:g (3.6) BS10 CLA ? GO:0009765 ... A1XKU7 36799903
    430 7pin:g (3.6) BS11 CLA ? GO:0009765 ... A1XKU7 36799903
    431 7pin:g (3.6) BS12 CLA ? GO:0009765 ... A1XKU7 36799903
    432 7pin:g (3.6) BS13 CLA ? GO:0009765 ... A1XKU7 36799903
    433 7pin:g (3.6) BS14 CLA ? GO:0009765 ... A1XKU7 36799903
    434 7pin:g (3.6) BS15 CHL ? GO:0009765 ... A1XKU7 36799903
    435 7pin:g (3.6) BS16 CHL ? GO:0009765 ... A1XKU7 36799903
    436 7pin:g1 (3.6) BS01 CHL ? GO:0009765 ... A1XKU7 36799903
    437 7pin:g1 (3.6) BS02 CLA ? GO:0009765 ... A1XKU7 36799903
    438 7pin:g1 (3.6) BS03 CLA ? GO:0009765 ... A1XKU7 36799903
    439 7pin:g1 (3.6) BS04 CLA ? GO:0009765 ... A1XKU7 36799903
    440 7pin:g1 (3.6) BS05 CHL ? GO:0009765 ... A1XKU7 36799903
    441 7pin:g1 (3.6) BS06 CHL ? GO:0009765 ... A1XKU7 36799903
    442 7pin:g1 (3.6) BS07 CHL ? GO:0009765 ... A1XKU7 36799903
    443 7pin:g1 (3.6) BS08 CHL ? GO:0009765 ... A1XKU7 36799903
    444 7pin:g1 (3.6) BS09 CHL ? GO:0009765 ... A1XKU7 36799903
    445 7pin:g1 (3.6) BS10 CLA ? GO:0009765 ... A1XKU7 36799903
    446 7pin:g1 (3.6) BS11 CLA ? GO:0009765 ... A1XKU7 36799903
    447 7pin:g1 (3.6) BS12 CLA ? GO:0009765 ... A1XKU7 36799903
    448 7pin:g1 (3.6) BS13 CLA ? GO:0009765 ... A1XKU7 36799903
    449 7pin:g1 (3.6) BS14 CLA ? GO:0009765 ... A1XKU7 36799903
    450 7pin:g1 (3.6) BS15 CHL ? GO:0009765 ... A1XKU7 36799903
    451 7pin:h (3.6) BS01 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    452 7pin:h (3.6) BS02 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    453 7pin:h (3.6) BS03 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    454 7pin:h (3.6) BS04 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    455 7pin:h (3.6) BS05 RRX ? GO:0009523 ... A0A1C8XRP3 36799903
    456 7pin:h (3.6) BS06 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    457 7pin:h1 (3.6) BS01 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    458 7pin:h1 (3.6) BS02 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    459 7pin:h1 (3.6) BS03 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    460 7pin:h1 (3.6) BS04 RRX ? GO:0009523 ... A0A1C8XRP3 36799903
    461 7pin:h1 (3.6) BS05 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    462 7pin:i (3.6) BS01 CLA ? GO:0005737 ... D0FXX5 36799903
    463 7pin:i (3.6) BS02 CLA ? GO:0005737 ... D0FXX5 36799903
    464 7pin:i (3.6) BS03 4RF ? GO:0005737 ... D0FXX5 36799903
    465 7pin:i1 (3.6) BS01 CLA ? GO:0005737 ... D0FXX5 36799903
    466 7pin:i1 (3.6) BS02 CLA ? GO:0005737 ... D0FXX5 36799903
    467 7pin:i1 (3.6) BS03 4RF ? GO:0005737 ... D0FXX5 36799903
    468 7pin:k (3.6) BS01 CLA ? GO:0009523 ... D0FXX2 36799903
    469 7pin:k (3.6) BS02 CLA ? GO:0009523 ... D0FXX2 36799903
    470 7pin:k (3.6) BS03 4RF ? GO:0009523 ... D0FXX2 36799903
    471 7pin:k1 (3.6) BS01 CLA ? GO:0009523 ... D0FXX2 36799903
    472 7pin:k1 (3.6) BS02 CLA ? GO:0009523 ... D0FXX2 36799903
    473 7pin:k1 (3.6) BS03 4RF ? GO:0009523 ... D0FXX2 36799903
    474 7pin:l (3.6) BS01 CLA ? GO:0005737 ... D0FY19 36799903
    475 7pin:m (3.6) BS01 CLA N/A GO:0009523 ... N/A 36799903
    476 7pin:m1 (3.6) BS01 CLA N/A GO:0009523 ... N/A 36799903
    477 7pin:n (3.6) BS01 CHL N/A GO:0009765 ... N/A 36799903
    478 7pin:n (3.6) BS02 CLA N/A GO:0009765 ... N/A 36799903
    479 7pin:n (3.6) BS03 CLA N/A GO:0009765 ... N/A 36799903
    480 7pin:n (3.6) BS04 CLA N/A GO:0009765 ... N/A 36799903
    481 7pin:n (3.6) BS05 CHL N/A GO:0009765 ... N/A 36799903
    482 7pin:n (3.6) BS06 CHL N/A GO:0009765 ... N/A 36799903
    483 7pin:n (3.6) BS07 CHL N/A GO:0009765 ... N/A 36799903
    484 7pin:n (3.6) BS08 CHL N/A GO:0009765 ... N/A 36799903
    485 7pin:n (3.6) BS09 CHL N/A GO:0009765 ... N/A 36799903
    486 7pin:n (3.6) BS10 CLA N/A GO:0009765 ... N/A 36799903
    487 7pin:n (3.6) BS11 CLA N/A GO:0009765 ... N/A 36799903
    488 7pin:n (3.6) BS12 CLA N/A GO:0009765 ... N/A 36799903
    489 7pin:n (3.6) BS13 CLA N/A GO:0009765 ... N/A 36799903
    490 7pin:n (3.6) BS14 CLA N/A GO:0009765 ... N/A 36799903
    491 7pin:n (3.6) BS15 CHL N/A GO:0009765 ... N/A 36799903
    492 7pin:n1 (3.6) BS01 CHL N/A GO:0009765 ... N/A 36799903
    493 7pin:n1 (3.6) BS02 CLA N/A GO:0009765 ... N/A 36799903
    494 7pin:n1 (3.6) BS03 CLA N/A GO:0009765 ... N/A 36799903
    495 7pin:n1 (3.6) BS04 CHL N/A GO:0009765 ... N/A 36799903
    496 7pin:n1 (3.6) BS05 CHL N/A GO:0009765 ... N/A 36799903
    497 7pin:n1 (3.6) BS06 CHL N/A GO:0009765 ... N/A 36799903
    498 7pin:n1 (3.6) BS07 CHL N/A GO:0009765 ... N/A 36799903
    499 7pin:n1 (3.6) BS08 CHL N/A GO:0009765 ... N/A 36799903
    500 7pin:n1 (3.6) BS09 CLA N/A GO:0009765 ... N/A 36799903
    501 7pin:n1 (3.6) BS10 CLA N/A GO:0009765 ... N/A 36799903
    502 7pin:n1 (3.6) BS11 CLA N/A GO:0009765 ... N/A 36799903
    503 7pin:n1 (3.6) BS12 CLA N/A GO:0009765 ... N/A 36799903
    504 7pin:n1 (3.6) BS13 CLA N/A GO:0009765 ... N/A 36799903
    505 7pin:n1 (3.6) BS14 CHL N/A GO:0009765 ... N/A 36799903
    506 7pin:r (3.6) BS01 4RF N/A GO:0009765 ... N/A 36799903
    507 7pin:r (3.6) BS02 C7Z N/A GO:0009765 ... N/A 36799903
    508 7pin:r (3.6) BS03 CLA N/A GO:0009765 ... N/A 36799903
    509 7pin:r (3.6) BS04 CLA N/A GO:0009765 ... N/A 36799903
    510 7pin:r (3.6) BS05 CLA N/A GO:0009765 ... N/A 36799903
    511 7pin:r (3.6) BS06 CHL N/A GO:0009765 ... N/A 36799903
    512 7pin:r (3.6) BS07 CHL N/A GO:0009765 ... N/A 36799903
    513 7pin:r (3.6) BS08 CLA N/A GO:0009765 ... N/A 36799903
    514 7pin:r (3.6) BS09 CLA N/A GO:0009765 ... N/A 36799903
    515 7pin:r (3.6) BS10 CLA N/A GO:0009765 ... N/A 36799903
    516 7pin:r (3.6) BS11 ERG N/A GO:0009765 ... N/A 36799903
    517 7pin:r1 (3.6) BS01 4RF N/A GO:0009765 ... N/A 36799903
    518 7pin:r1 (3.6) BS02 CHL N/A GO:0009765 ... N/A 36799903
    519 7pin:r1 (3.6) BS03 C7Z N/A GO:0009765 ... N/A 36799903
    520 7pin:r1 (3.6) BS04 CLA N/A GO:0009765 ... N/A 36799903
    521 7pin:r1 (3.6) BS05 CLA N/A GO:0009765 ... N/A 36799903
    522 7pin:r1 (3.6) BS06 CLA N/A GO:0009765 ... N/A 36799903
    523 7pin:r1 (3.6) BS07 CHL N/A GO:0009765 ... N/A 36799903
    524 7pin:r1 (3.6) BS08 CHL N/A GO:0009765 ... N/A 36799903
    525 7pin:r1 (3.6) BS09 CLA N/A GO:0009765 ... N/A 36799903
    526 7pin:r1 (3.6) BS10 CLA N/A GO:0009765 ... N/A 36799903
    527 7pin:r1 (3.6) BS11 CLA N/A GO:0009765 ... N/A 36799903
    528 7pin:r1 (3.6) BS12 CLA N/A GO:0009765 ... N/A 36799903
    529 7pin:r1 (3.6) BS13 ERG N/A GO:0009765 ... N/A 36799903
    530 7pin:s (3.6) BS01 CLA N/A GO:0009765 ... N/A 36799903
    531 7pin:s (3.6) BS02 CHL N/A GO:0009765 ... N/A 36799903
    532 7pin:s (3.6) BS03 CHL N/A GO:0009765 ... N/A 36799903
    533 7pin:s (3.6) BS04 CLA N/A GO:0009765 ... N/A 36799903
    534 7pin:s (3.6) BS05 CLA N/A GO:0009765 ... N/A 36799903
    535 7pin:s (3.6) BS06 CLA N/A GO:0009765 ... N/A 36799903
    536 7pin:s (3.6) BS07 CLA N/A GO:0009765 ... N/A 36799903
    537 7pin:s (3.6) BS08 CHL N/A GO:0009765 ... N/A 36799903
    538 7pin:s (3.6) BS09 CHL N/A GO:0009765 ... N/A 36799903
    539 7pin:s (3.6) BS10 CHL N/A GO:0009765 ... N/A 36799903
    540 7pin:s (3.6) BS11 CLA N/A GO:0009765 ... N/A 36799903
    541 7pin:s (3.6) BS12 CLA N/A GO:0009765 ... N/A 36799903
    542 7pin:s (3.6) BS13 CLA N/A GO:0009765 ... N/A 36799903
    543 7pin:s (3.6) BS14 CLA N/A GO:0009765 ... N/A 36799903
    544 7pin:s (3.6) BS15 CLA N/A GO:0009765 ... N/A 36799903
    545 7pin:s (3.6) BS16 CLA N/A GO:0009765 ... N/A 36799903
    546 7pin:s (3.6) BS17 CLA N/A GO:0009765 ... N/A 36799903
    547 7pin:s1 (3.6) BS01 CLA N/A GO:0009765 ... N/A 36799903
    548 7pin:s1 (3.6) BS02 LMK N/A GO:0009765 ... N/A 36799903
    549 7pin:s1 (3.6) BS03 CHL N/A GO:0009765 ... N/A 36799903
    550 7pin:s1 (3.6) BS04 CHL N/A GO:0009765 ... N/A 36799903
    551 7pin:s1 (3.6) BS05 CLA N/A GO:0009765 ... N/A 36799903
    552 7pin:s1 (3.6) BS06 CLA N/A GO:0009765 ... N/A 36799903
    553 7pin:s1 (3.6) BS07 CLA N/A GO:0009765 ... N/A 36799903
    554 7pin:s1 (3.6) BS08 CHL N/A GO:0009765 ... N/A 36799903
    555 7pin:s1 (3.6) BS09 CHL N/A GO:0009765 ... N/A 36799903
    556 7pin:s1 (3.6) BS10 CHL N/A GO:0009765 ... N/A 36799903
    557 7pin:s1 (3.6) BS11 CLA N/A GO:0009765 ... N/A 36799903
    558 7pin:s1 (3.6) BS12 CLA N/A GO:0009765 ... N/A 36799903
    559 7pin:s1 (3.6) BS13 CLA N/A GO:0009765 ... N/A 36799903
    560 7pin:s1 (3.6) BS14 CLA N/A GO:0009765 ... N/A 36799903
    561 7pin:s1 (3.6) BS15 CLA N/A GO:0009765 ... N/A 36799903
    562 7pin:s1 (3.6) BS16 CLA N/A GO:0009765 ... N/A 36799903
    563 7pin:s1 (3.6) BS17 CLA N/A GO:0009765 ... N/A 36799903
    564 7pin:s1 (3.6) BS18 LPX N/A GO:0009765 ... N/A 36799903
    565 7pin:t (3.6) BS01 C7Z ? GO:0005737 ... D0FY04 36799903
    566 7pin:w (3.6) BS01 CLA N/A GO:0009507 ... N/A 36799903
    567 7pin:w1 (3.6) BS01 4RF N/A GO:0009507 ... N/A 36799903
    568 7pin:x1 (3.6) BS01 CLA N/A GO:0009523 ... N/A 36799903
    569 7pin:y (3.6) BS01 CHL N/A GO:0009765 ... N/A 36799903
    570 7pin:y (3.6) BS02 CHL N/A GO:0009765 ... N/A 36799903
    571 7pin:y (3.6) BS03 CLA N/A GO:0009765 ... N/A 36799903
    572 7pin:y (3.6) BS04 CLA N/A GO:0009765 ... N/A 36799903
    573 7pin:y (3.6) BS05 CLA N/A GO:0009765 ... N/A 36799903
    574 7pin:y (3.6) BS06 CHL N/A GO:0009765 ... N/A 36799903
    575 7pin:y (3.6) BS07 CHL N/A GO:0009765 ... N/A 36799903
    576 7pin:y (3.6) BS08 CHL N/A GO:0009765 ... N/A 36799903
    577 7pin:y (3.6) BS09 CLA N/A GO:0009765 ... N/A 36799903
    578 7pin:y (3.6) BS10 CHL N/A GO:0009765 ... N/A 36799903
    579 7pin:y (3.6) BS11 CLA N/A GO:0009765 ... N/A 36799903
    580 7pin:y (3.6) BS12 CLA N/A GO:0009765 ... N/A 36799903
    581 7pin:y (3.6) BS13 CLA N/A GO:0009765 ... N/A 36799903
    582 7pin:y (3.6) BS14 CLA N/A GO:0009765 ... N/A 36799903
    583 7pin:y (3.6) BS15 CLA N/A GO:0009765 ... N/A 36799903
    584 7pin:y1 (3.6) BS01 CHL N/A GO:0009765 ... N/A 36799903
    585 7pin:y1 (3.6) BS02 CHL N/A GO:0009765 ... N/A 36799903
    586 7pin:y1 (3.6) BS03 CHL N/A GO:0009765 ... N/A 36799903
    587 7pin:y1 (3.6) BS04 CLA N/A GO:0009765 ... N/A 36799903
    588 7pin:y1 (3.6) BS05 CLA N/A GO:0009765 ... N/A 36799903
    589 7pin:y1 (3.6) BS06 CHL N/A GO:0009765 ... N/A 36799903
    590 7pin:y1 (3.6) BS07 CHL N/A GO:0009765 ... N/A 36799903
    591 7pin:y1 (3.6) BS08 CHL N/A GO:0009765 ... N/A 36799903
    592 7pin:y1 (3.6) BS09 CLA N/A GO:0009765 ... N/A 36799903
    593 7pin:y1 (3.6) BS10 CHL N/A GO:0009765 ... N/A 36799903
    594 7pin:y1 (3.6) BS11 CLA N/A GO:0009765 ... N/A 36799903
    595 7pin:y1 (3.6) BS12 CLA N/A GO:0009765 ... N/A 36799903
    596 7pin:y1 (3.6) BS13 CLA N/A GO:0009765 ... N/A 36799903
    597 7pin:y1 (3.6) BS14 CLA N/A GO:0009765 ... N/A 36799903
    598 7pin:y1 (3.6) BS15 CLA N/A GO:0009765 ... N/A 36799903
    599 7pin:z1 (3.6) BS01 CLA ? GO:0009523 ... D0FXZ2 36799903
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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