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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7p61:B (3.2) BS01 SF4 7.1.1.- GO:0003954 ... P0AFC7 36104567
    2 7p61:E (3.2) BS01 FES 7.1.1.- GO:0003954 ... P0AFD1 36104567
    3 7p61:F (3.2) BS01 SF4 7.1.1.- GO:0003954 ... P31979 36104567
    4 7p61:F (3.2) BS02 FMN 7.1.1.- GO:0003954 ... P31979 36104567
    5 7p61:F (3.2) BS03 NAI 7.1.1.- GO:0003954 ... P31979 36104567
    6 7p61:G (3.2) BS01 SF4 7.1.1.- GO:0003954 ... P33602 36104567
    7 7p61:G (3.2) BS02 SF4 7.1.1.- GO:0003954 ... P33602 36104567
    8 7p61:G (3.2) BS03 SF4 7.1.1.- GO:0003954 ... P33602 36104567
    9 7p61:G (3.2) BS04 FES 7.1.1.- GO:0003954 ... P33602 36104567
    10 7p61:G (3.2) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    11 7p61:H (3.2) BS01 UQ8 7.1.1.- GO:0003954 ... P0AFD4 36104567
    12 7p61:I (3.2) BS01 SF4 7.1.1.- GO:0016020 ... P0AFD6 36104567
    13 7p61:I (3.2) BS02 SF4 7.1.1.- GO:0016020 ... P0AFD6 36104567
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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