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BioLiP
Download all results in tab-seperated text for 62 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7o19:AB (2.9) BS01 rna ? GO:0000028 ... P0A7V0 34504068
    2 7o19:AB (2.9) BS02 ZN ? GO:0000028 ... P0A7V0 34504068
    3 7o19:AC (2.9) BS01 rna ? GO:0000028 ... P0A7V3 34504068
    4 7o19:AD (2.9) BS01 rna ? GO:0000028 ... P0A7V8 34504068
    5 7o19:AE (2.9) BS01 rna ? GO:0000028 ... P0A7W1 34504068
    6 7o19:AF (2.9) BS01 rna ? GO:0002181 ... P02358 34504068
    7 7o19:AG (2.9) BS01 rna ? GO:0000028 ... P02359 34504068
    8 7o19:AG (2.9) BS02 rna ? GO:0000028 ... P02359 34504068
    9 7o19:AH (2.9) BS01 rna ? GO:0000028 ... P0A7W7 34504068
    10 7o19:AI (2.9) BS01 rna ? GO:0000049 ... P0A7X3 34504068
    11 7o19:AJ (2.9) BS01 rna ? GO:0000049 ... P0A7R5 34504068
    12 7o19:AK (2.9) BS01 rna ? GO:0002181 ... P0A7R9 34504068
    13 7o19:AL (2.9) BS01 rna ? GO:0000049 ... P0A7S3 34504068
    14 7o19:AM (2.9) BS01 rna ? GO:0000049 ... P0A7S9 34504068
    15 7o19:AN (2.9) BS01 rna ? GO:0003735 ... P0AG59 34504068
    16 7o19:AO (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 34504068
    17 7o19:AO (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 34504068
    18 7o19:AP (2.9) BS01 rna ? GO:0000028 ... P0A7T3 34504068
    19 7o19:AQ (2.9) BS01 rna ? GO:0000028 ... P0AG63 34504068
    20 7o19:AR (2.9) BS01 rna ? GO:0002181 ... P0A7T7 34504068
    21 7o19:AS (2.9) BS01 rna ? GO:0000028 ... P0A7U3 34504068
    22 7o19:AT (2.9) BS01 rna ? GO:0000028 ... P0A7U7 34504068
    23 7o19:AU (2.9) BS01 rna ? GO:0000028 ... P68679 34504068
    24 7o19:B0 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 34504068
    25 7o19:B1 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 34504068
    26 7o19:B2 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 34504068
    27 7o19:B3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 34504068
    28 7o19:B4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 34504068
    29 7o19:B4 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 34504068
    30 7o19:BC (2.9) BS01 rna ? GO:0000027 ... P60422 34504068
    31 7o19:BD (2.9) BS01 rna ? GO:0000027 ... P60438 34504068
    32 7o19:BE (2.9) BS01 rna ? GO:0001070 ... P60723 34504068
    33 7o19:BF (2.9) BS01 rna ? GO:0000027 ... P62399 34504068
    34 7o19:BF (2.9) BS02 rna ? GO:0000027 ... P62399 34504068
    35 7o19:BF (2.9) BS03 rna ? GO:0000027 ... P62399 34504068
    36 7o19:BG (2.9) BS01 rna ? GO:0000027 ... P0AG55 34504068
    37 7o19:BH (2.9) BS01 rna ? GO:0002181 ... P0A7R1 34504068
    38 7o19:BI (2.9) BS01 rna ? GO:0002181 ... P0A7M9 34504068
    39 7o19:BI (2.9) BS02 rna ? GO:0002181 ... P0A7M9 34504068
    40 7o19:BI (2.9) BS03 ZN ? GO:0002181 ... P0A7M9 34504068
    41 7o19:BJ (2.9) BS01 rna ? GO:0002181 ... P0AA10 34504068
    42 7o19:BK (2.9) BS01 rna ? GO:0002181 ... P0ADY3 34504068
    43 7o19:BK (2.9) BS02 rna ? GO:0002181 ... P0ADY3 34504068
    44 7o19:BL (2.9) BS01 rna ? GO:0002181 ... P02413 34504068
    45 7o19:BM (2.9) BS01 rna ? GO:0000027 ... P0ADY7 34504068
    46 7o19:BM (2.9) BS02 rna ? GO:0000027 ... P0ADY7 34504068
    47 7o19:BN (2.9) BS01 rna ? GO:0000027 ... P0AG44 34504068
    48 7o19:BO (2.9) BS01 rna ? GO:0002181 ... P0C018 34504068
    49 7o19:BO (2.9) BS02 rna ? GO:0002181 ... P0C018 34504068
    50 7o19:BP (2.9) BS01 rna ? GO:0000027 ... P0A7K6 34504068
    51 7o19:BP (2.9) BS02 rna ? GO:0000027 ... P0A7K6 34504068
    52 7o19:BQ (2.9) BS01 rna ? GO:0000027 ... P0A7L3 34504068
    53 7o19:BR (2.9) BS01 rna ? GO:0002181 ... P0AG48 34504068
    54 7o19:BS (2.9) BS01 rna ? GO:0002181 ... P61175 34504068
    55 7o19:BT (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 34504068
    56 7o19:BU (2.9) BS01 rna ? GO:0000027 ... P60624 34504068
    57 7o19:BV (2.9) BS01 rna ? GO:0000027 ... P68919 34504068
    58 7o19:BW (2.9) BS01 rna ? GO:0000027 ... P0A7L8 34504068
    59 7o19:BW (2.9) BS02 rna ? GO:0000027 ... P0A7L8 34504068
    60 7o19:BX (2.9) BS01 rna ? GO:0000027 ... P0A7M2 34504068
    61 7o19:BY (2.9) BS01 rna ? GO:0000027 ... P0A7M6 34504068
    62 7o19:BZ (2.9) BS01 rna ? GO:0000027 ... P0AG51 34504068
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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