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BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7nvm:A (3.1) BS01 ADP ? GO:0000242 ... P17987 35449234
    2 7nvm:A (3.1) BS02 AF3 ? GO:0000242 ... P17987 35449234
    3 7nvm:B (3.1) BS01 ADP ? GO:0002199 ... P78371 35449234
    4 7nvm:B (3.1) BS02 AF3 ? GO:0002199 ... P78371 35449234
    5 7nvm:D (3.1) BS01 ADP ? GO:0002199 ... P50991 35449234
    6 7nvm:D (3.1) BS02 AF3 ? GO:0002199 ... P50991 35449234
    7 7nvm:E (3.1) BS01 ADP ? GO:0003730 ... P48643 35449234
    8 7nvm:E (3.1) BS02 AF3 ? GO:0003730 ... P48643 35449234
    9 7nvm:G (3.1) BS01 ADP ? GO:0002199 ... P49368 35449234
    10 7nvm:G (3.1) BS02 AF3 ? GO:0002199 ... P49368 35449234
    11 7nvm:H (3.1) BS01 ADP ? GO:0005515 ... Q99832 35449234
    12 7nvm:H (3.1) BS02 AF3 ? GO:0005515 ... Q99832 35449234
    13 7nvm:Q (3.1) BS01 ADP ? GO:0002199 ... P50990 35449234
    14 7nvm:Q (3.1) BS02 AF3 ? GO:0002199 ... P50990 35449234
    15 7nvm:Z (3.1) BS01 ADP ? GO:0003723 ... P40227 35449234
    16 7nvm:Z (3.1) BS02 AF3 ? GO:0003723 ... P40227 35449234
    17 7nvm:a (3.1) BS01 ADP ? GO:0000242 ... P17987 35449234
    18 7nvm:a (3.1) BS02 AF3 ? GO:0000242 ... P17987 35449234
    19 7nvm:b (3.1) BS01 ADP ? GO:0002199 ... P78371 35449234
    20 7nvm:b (3.1) BS02 MG ? GO:0002199 ... P78371 35449234
    21 7nvm:b (3.1) BS03 AF3 ? GO:0002199 ... P78371 35449234
    22 7nvm:d (3.1) BS01 ADP ? GO:0002199 ... P50991 35449234
    23 7nvm:d (3.1) BS02 AF3 ? GO:0002199 ... P50991 35449234
    24 7nvm:e (3.1) BS01 ADP ? GO:0003730 ... P48643 35449234
    25 7nvm:e (3.1) BS02 AF3 ? GO:0003730 ... P48643 35449234
    26 7nvm:g (3.1) BS01 ADP ? GO:0002199 ... P49368 35449234
    27 7nvm:g (3.1) BS02 AF3 ? GO:0002199 ... P49368 35449234
    28 7nvm:h (3.1) BS01 ADP ? GO:0005515 ... Q99832 35449234
    29 7nvm:h (3.1) BS02 AF3 ? GO:0005515 ... Q99832 35449234
    30 7nvm:q (3.1) BS01 ADP ? GO:0002199 ... P50990 35449234
    31 7nvm:q (3.1) BS02 AF3 ? GO:0002199 ... P50990 35449234
    32 7nvm:z (3.1) BS01 ADP ? GO:0003723 ... P40227 35449234
    33 7nvm:z (3.1) BS02 AF3 ? GO:0003723 ... P40227 35449234
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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