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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7cpj:0 (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    2 7cpj:1 (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    3 7cpj:2 (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    4 7cpj:3 (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    5 7cpj:4 (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    6 7cpj:5 (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    7 7cpj:6 (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    8 7cpj:C (3.3) BS01 rna N/A GO:0003723 ... N/A 34906996
    9 7cpj:C (3.3) BS02 rna N/A GO:0003723 ... N/A 34906996
    10 7cpj:D (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    11 7cpj:E (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    12 7cpj:F (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    13 7cpj:F (3.3) BS02 rna N/A GO:0003735 ... N/A 34906996
    14 7cpj:F (3.3) BS03 rna N/A GO:0003735 ... N/A 34906996
    15 7cpj:G (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    16 7cpj:H (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    17 7cpj:I (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    18 7cpj:J (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    19 7cpj:K (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    20 7cpj:K (3.3) BS02 rna N/A GO:0003735 ... N/A 34906996
    21 7cpj:L (3.3) BS01 rna ? GO:0003735 ... A0A037Y8L6 34906996
    22 7cpj:M (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    23 7cpj:M (3.3) BS02 rna N/A GO:0003735 ... N/A 34906996
    24 7cpj:N (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    25 7cpj:O (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    26 7cpj:O (3.3) BS02 rna N/A GO:0003735 ... N/A 34906996
    27 7cpj:P (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    28 7cpj:P (3.3) BS02 rna N/A GO:0003735 ... N/A 34906996
    29 7cpj:Q (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    30 7cpj:R (3.3) BS01 rna N/A GO:0003723 ... N/A 34906996
    31 7cpj:S (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    32 7cpj:T (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    33 7cpj:U (3.3) BS01 rna N/A GO:0003723 ... N/A 34906996
    34 7cpj:V (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    35 7cpj:W (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    36 7cpj:W (3.3) BS02 rna N/A GO:0003735 ... N/A 34906996
    37 7cpj:X (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    38 7cpj:Y (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    39 7cpj:Z (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    40 7cpj:Z (3.3) BS02 rna N/A GO:0003735 ... N/A 34906996
    41 7cpj:b (3.3) BS01 rna ? GO:0003735 ... C3TPN2 34906996
    42 7cpj:c (3.3) BS01 rna N/A GO:0003676 ... N/A 34906996
    43 7cpj:d (3.3) BS01 rna N/A GO:0003723 ... N/A 34906996
    44 7cpj:e (3.3) BS01 rna N/A GO:0003723 ... N/A 34906996
    45 7cpj:f (3.3) BS01 rna ? GO:0002181 ... P02358 34906996
    46 7cpj:g (3.3) BS01 rna N/A GO:0003723 ... N/A 34906996
    47 7cpj:h (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    48 7cpj:i (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    49 7cpj:j (3.3) BS01 rna N/A GO:0003723 ... N/A 34906996
    50 7cpj:k (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    51 7cpj:l (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    52 7cpj:m (3.3) BS01 rna ? GO:0000049 ... A0A0H3ML81 34906996
    53 7cpj:n (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    54 7cpj:o (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    55 7cpj:o (3.3) BS02 rna N/A GO:0003735 ... N/A 34906996
    56 7cpj:p (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    57 7cpj:q (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    58 7cpj:r (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    59 7cpj:s (3.3) BS01 rna N/A GO:0003723 ... N/A 34906996
    60 7cpj:t (3.3) BS01 rna N/A GO:0003723 ... N/A 34906996
    61 7cpj:u (3.3) BS01 rna N/A GO:0003735 ... N/A 34906996
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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