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BioLiP
Download all results in tab-seperated text for 304 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 7bgi:A (2.54) BS52 C7Z 1.97.1.12 GO:0000287 ... P12154 N/A
    202 7bgi:B (2.54) BS01 CL0 1.97.1.12 GO:0000287 ... P09144 N/A
    203 7bgi:B (2.54) BS02 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    204 7bgi:B (2.54) BS03 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    205 7bgi:B (2.54) BS04 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    206 7bgi:B (2.54) BS05 SF4 1.97.1.12 GO:0000287 ... P09144 N/A
    207 7bgi:B (2.54) BS06 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    208 7bgi:B (2.54) BS07 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    209 7bgi:B (2.54) BS08 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    210 7bgi:B (2.54) BS09 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    211 7bgi:B (2.54) BS10 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    212 7bgi:B (2.54) BS11 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    213 7bgi:B (2.54) BS12 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    214 7bgi:B (2.54) BS13 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    215 7bgi:B (2.54) BS14 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    216 7bgi:B (2.54) BS15 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    217 7bgi:B (2.54) BS16 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    218 7bgi:B (2.54) BS17 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    219 7bgi:B (2.54) BS18 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    220 7bgi:B (2.54) BS19 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    221 7bgi:B (2.54) BS20 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    222 7bgi:B (2.54) BS21 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    223 7bgi:B (2.54) BS22 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    224 7bgi:B (2.54) BS23 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    225 7bgi:B (2.54) BS24 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    226 7bgi:B (2.54) BS25 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    227 7bgi:B (2.54) BS26 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    228 7bgi:B (2.54) BS27 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    229 7bgi:B (2.54) BS28 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    230 7bgi:B (2.54) BS29 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    231 7bgi:B (2.54) BS30 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    232 7bgi:B (2.54) BS31 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    233 7bgi:B (2.54) BS32 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    234 7bgi:B (2.54) BS33 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    235 7bgi:B (2.54) BS34 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    236 7bgi:B (2.54) BS35 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    237 7bgi:B (2.54) BS36 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    238 7bgi:B (2.54) BS37 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    239 7bgi:B (2.54) BS38 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    240 7bgi:B (2.54) BS39 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    241 7bgi:B (2.54) BS40 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    242 7bgi:B (2.54) BS41 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    243 7bgi:B (2.54) BS42 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    244 7bgi:B (2.54) BS43 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    245 7bgi:B (2.54) BS44 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    246 7bgi:B (2.54) BS45 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    247 7bgi:B (2.54) BS46 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    248 7bgi:B (2.54) BS47 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    249 7bgi:B (2.54) BS48 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    250 7bgi:B (2.54) BS49 PQN 1.97.1.12 GO:0000287 ... P09144 N/A
    251 7bgi:B (2.54) BS50 CA 1.97.1.12 GO:0000287 ... P09144 N/A
    252 7bgi:B (2.54) BS51 T7X 1.97.1.12 GO:0000287 ... P09144 N/A
    253 7bgi:B (2.54) BS52 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    254 7bgi:B (2.54) BS53 CHL 1.97.1.12 GO:0000287 ... P09144 N/A
    255 7bgi:C (2.54) BS01 SF4 1.97.1.12 GO:0009055 ... Q00914 N/A
    256 7bgi:C (2.54) BS02 SF4 1.97.1.12 GO:0009055 ... Q00914 N/A
    257 7bgi:F (2.54) BS01 CLA ? GO:0009522 ... P12356 N/A
    258 7bgi:F (2.54) BS02 CLA ? GO:0009522 ... P12356 N/A
    259 7bgi:F (2.54) BS03 CLA ? GO:0009522 ... P12356 N/A
    260 7bgi:F (2.54) BS04 CLA ? GO:0009522 ... P12356 N/A
    261 7bgi:F (2.54) BS05 CLA ? GO:0009522 ... P12356 N/A
    262 7bgi:F (2.54) BS06 CLA ? GO:0009522 ... P12356 N/A
    263 7bgi:F (2.54) BS07 RRX ? GO:0009522 ... P12356 N/A
    264 7bgi:F (2.54) BS08 CLA ? GO:0009522 ... P12356 N/A
    265 7bgi:G (2.54) BS01 CLA ? GO:0009522 ... P14224 N/A
    266 7bgi:G (2.54) BS02 CLA ? GO:0009522 ... P14224 N/A
    267 7bgi:G (2.54) BS03 CLA ? GO:0009522 ... P14224 N/A
    268 7bgi:G (2.54) BS04 CLA ? GO:0009522 ... P14224 N/A
    269 7bgi:I (2.54) BS01 CLA ? GO:0009522 ... A8IFG7 N/A
    270 7bgi:I (2.54) BS02 CLA ? GO:0009522 ... A8IFG7 N/A
    271 7bgi:I (2.54) BS03 CLA ? GO:0009522 ... A8IFG7 N/A
    272 7bgi:J (2.54) BS01 CLA ? GO:0009507 ... P59777 N/A
    273 7bgi:J (2.54) BS02 CLA ? GO:0009507 ... P59777 N/A
    274 7bgi:J (2.54) BS03 CLA ? GO:0009507 ... P59777 N/A
    275 7bgi:J (2.54) BS04 T7X ? GO:0009507 ... P59777 N/A
    276 7bgi:J (2.54) BS05 CLA ? GO:0009507 ... P59777 N/A
    277 7bgi:J (2.54) BS06 CLA ? GO:0009507 ... P59777 N/A
    278 7bgi:J (2.54) BS07 C7Z ? GO:0009507 ... P59777 N/A
    279 7bgi:K (2.54) BS01 CLA ? GO:0009522 ... P14225 N/A
    280 7bgi:K (2.54) BS02 CLA ? GO:0009522 ... P14225 N/A
    281 7bgi:K (2.54) BS03 CLA ? GO:0009522 ... P14225 N/A
    282 7bgi:K (2.54) BS04 CLA ? GO:0009522 ... P14225 N/A
    283 7bgi:K (2.54) BS05 CLA ? GO:0009522 ... P14225 N/A
    284 7bgi:K (2.54) BS06 CLA ? GO:0009522 ... P14225 N/A
    285 7bgi:K (2.54) BS07 CLA ? GO:0009522 ... P14225 N/A
    286 7bgi:L (2.54) BS01 CLA ? GO:0009522 ... A8IL32 N/A
    287 7bgi:L (2.54) BS02 CLA ? GO:0009522 ... A8IL32 N/A
    288 7bgi:L (2.54) BS03 CLA ? GO:0009522 ... A8IL32 N/A
    289 7bgi:L (2.54) BS04 CLA ? GO:0009522 ... A8IL32 N/A
    290 7bgi:L (2.54) BS05 CLA ? GO:0009522 ... A8IL32 N/A
    291 7bgi:Z (2.54) BS01 CLA ? GO:0009765 ... Q05093 N/A
    292 7bgi:Z (2.54) BS02 CLA ? GO:0009765 ... Q05093 N/A
    293 7bgi:Z (2.54) BS03 CLA ? GO:0009765 ... Q05093 N/A
    294 7bgi:Z (2.54) BS04 CLA ? GO:0009765 ... Q05093 N/A
    295 7bgi:Z (2.54) BS05 CLA ? GO:0009765 ... Q05093 N/A
    296 7bgi:Z (2.54) BS06 CLA ? GO:0009765 ... Q05093 N/A
    297 7bgi:Z (2.54) BS07 CLA ? GO:0009765 ... Q05093 N/A
    298 7bgi:Z (2.54) BS08 CLA ? GO:0009765 ... Q05093 N/A
    299 7bgi:Z (2.54) BS09 CHL ? GO:0009765 ... Q05093 N/A
    300 7bgi:Z (2.54) BS10 CLA ? GO:0009765 ... Q05093 N/A
    301 7bgi:Z (2.54) BS11 CLA ? GO:0009765 ... Q05093 N/A
    302 7bgi:Z (2.54) BS12 CHL ? GO:0009765 ... Q05093 N/A
    303 7bgi:Z (2.54) BS13 CLA ? GO:0009765 ... Q05093 N/A
    304 7bgi:Z (2.54) BS14 CHL ? GO:0009765 ... Q05093 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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