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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7b0n:E (3.7) BS01 FES 1.6.99.3 GO:0016491 ... Q9UUT9 33640456
    2 7b0n:F (3.7) BS01 FMN 7.1.1.2 GO:0005739 ... Q9UUU2 33640456
    3 7b0n:F (3.7) BS02 SF4 7.1.1.2 GO:0005739 ... Q9UUU2 33640456
    4 7b0n:G (3.7) BS01 SF4 1.6.99.3 GO:0003954 ... Q9UUU3 33640456
    5 7b0n:G (3.7) BS02 SF4 1.6.99.3 GO:0003954 ... Q9UUU3 33640456
    6 7b0n:G (3.7) BS03 FES 1.6.99.3 GO:0003954 ... Q9UUU3 33640456
    7 7b0n:I (3.7) BS01 SF4 1.6.99.3 GO:0016020 ... Q9UUT8 33640456
    8 7b0n:I (3.7) BS02 SF4 1.6.99.3 GO:0016020 ... Q9UUT8 33640456
    9 7b0n:P (3.7) BS01 NDP ? GO:0005739 ... A0A371BY45 33640456
    10 7b0n:R (3.7) BS01 ZN ? N/A A0A1H6Q8Z5 33640456
    11 7b0n:T (3.7) BS01 EHZ ? GO:0006633 ... A0A1H6PXT9 33640456
    12 7b0n:U (3.7) BS01 EHZ ? GO:0006633 ... A0A1D8NG21 33640456
    13 7b0n:W (3.7) BS01 EHZ ? GO:0005739 ... A0A1D8N3C8 33640456
    14 7b0n:n (3.7) BS01 EHZ ? GO:0005739 ... A0A1D8NDL1 33640456
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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