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BioLiP
Download all results in tab-seperated text for 25 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7arb:B (3.41) BS01 SF4 7.1.1.2 GO:0005739 ... Q42577 33768254
    2 7arb:B (3.41) BS02 UQ9 7.1.1.2 GO:0005739 ... Q42577 33768254
    3 7arb:D (3.41) BS01 SF4 7.1.1.2 GO:0005739 ... P93306 33768254
    4 7arb:E (3.41) BS01 FES 7.1.1.2 GO:0005739 ... O22769 33768254
    5 7arb:F (3.41) BS01 FMN 7.1.1.2 GO:0005739 ... Q9FNN5 33768254
    6 7arb:F (3.41) BS02 SF4 7.1.1.2 GO:0005739 ... Q9FNN5 33768254
    7 7arb:G (3.41) BS01 FES 7.1.1.2 GO:0005739 ... Q9FGI6 33768254
    8 7arb:G (3.41) BS02 SF4 7.1.1.2 GO:0005739 ... Q9FGI6 33768254
    9 7arb:G (3.41) BS03 SF4 7.1.1.2 GO:0005739 ... Q9FGI6 33768254
    10 7arb:H (3.41) BS01 UQ9 7.1.1.2 GO:0003954 ... P92558 33768254
    11 7arb:I (3.41) BS01 SF4 7.1.1.2 GO:0005739 ... Q42599 33768254
    12 7arb:I (3.41) BS02 SF4 7.1.1.2 GO:0005739 ... Q42599 33768254
    13 7arb:M (3.41) BS01 LMN 7.1.1.2 GO:0003954 ... P93313 33768254
    14 7arb:O (3.41) BS01 FE ? GO:0005515 ... Q9SRR8 33768254
    15 7arb:P (3.41) BS01 NDP ? GO:0005739 ... Q9SK66 33768254
    16 7arb:R (3.41) BS01 ZN ? GO:0005739 ... Q9M9M6 33768254
    17 7arb:U (3.41) BS01 8Q1 ? GO:0000036 ... O80800 33768254
    18 7arb:V (3.41) BS01 peptide ? GO:0005515 ... Q9FLX7 33768254
    19 7arb:W (3.41) BS01 8Q1 ? GO:0005739 ... Q9LHI0 33768254
    20 7arb:d (3.41) BS01 LMN ? GO:0000325 ... Q94AL6 33768254
    21 7arb:f (3.41) BS01 T7X ? GO:0005739 ... Q84W12 33768254
    22 7arb:n (3.41) BS01 8Q1 ? GO:0000325 ... Q945M1 33768254
    23 7arb:y (3.41) BS01 ZN 4.2.1.- GO:0004089 ... Q9C6B3 33768254
    24 7arb:z (3.41) BS01 T7X 4.2.1.- GO:0004089 ... Q9FWR5 33768254
    25 7arb:z (3.41) BS02 PSF 4.2.1.- GO:0004089 ... Q9FWR5 33768254
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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