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BioLiP
Download all results in tab-seperated text for 37 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zqg:CJ (3.5) BS01 rna ? GO:0005515 ... P53941 32943521
    2 6zqg:CK (3.5) BS01 rna ? GO:0000447 ... P47083 32943521
    3 6zqg:CL (3.5) BS01 rna ? GO:0000462 ... Q08965 32943521
    4 6zqg:CL (3.5) BS02 GTP ? GO:0000462 ... Q08965 32943521
    5 6zqg:CL (3.5) BS03 MG ? GO:0000462 ... Q08965 32943521
    6 6zqg:CM (3.5) BS01 rna ? GO:0000447 ... Q08096 32943521
    7 6zqg:DA (3.5) BS01 rna ? GO:0000462 ... P33442 32943521
    8 6zqg:DE (3.5) BS01 rna ? GO:0002181 ... P0CX35 32943521
    9 6zqg:DF (3.5) BS01 rna ? GO:0000028 ... P26783 32943521
    10 6zqg:DG (3.5) BS01 rna ? GO:0000462 ... P0CX37 32943521
    11 6zqg:DH (3.5) BS01 rna ? GO:0002181 ... P26786 32943521
    12 6zqg:DI (3.5) BS01 rna ? GO:0000462 ... P0CX39 32943521
    13 6zqg:DJ (3.5) BS01 rna ? GO:0000462 ... O13516 32943521
    14 6zqg:DL (3.5) BS01 rna ? GO:0000028 ... P0CX47 32943521
    15 6zqg:DN (3.5) BS01 rna ? GO:0000462 ... P05756 32943521
    16 6zqg:DO (3.5) BS01 rna ? GO:0000028 ... P06367 32943521
    17 6zqg:DQ (3.5) BS01 rna ? GO:0000462 ... P0CX51 32943521
    18 6zqg:DS (3.5) BS01 rna ? GO:0003676 ... P0CX55 32943521
    19 6zqg:DT (3.5) BS01 rna ? GO:0000028 ... P07280 32943521
    20 6zqg:DW (3.5) BS01 rna ? GO:0002181 ... P0C0W1 32943521
    21 6zqg:DX (3.5) BS01 rna ? GO:0000462 ... P0CX29 32943521
    22 6zqg:DY (3.5) BS01 rna ? GO:0000462 ... P0CX31 32943521
    23 6zqg:DZ (3.5) BS01 rna ? GO:0002181 ... Q3E792 32943521
    24 6zqg:Db (3.5) BS01 rna ? GO:0000028 ... P35997 32943521
    25 6zqg:Dc (3.5) BS01 rna ? GO:0000028 ... Q3E7X9 32943521
    26 6zqg:JD (3.5) BS01 rna 3.6.4.13 GO:0000462 ... Q04217 32943521
    27 6zqg:JD (3.5) BS02 rna 3.6.4.13 GO:0000462 ... Q04217 32943521
    28 6zqg:JG (3.5) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943521
    29 6zqg:JJ (3.5) BS01 rna ? GO:0000056 ... Q99216 32943521
    30 6zqg:JL (3.5) BS01 rna 2.1.1.183 GO:0000154 ... P41819 32943521
    31 6zqg:JL (3.5) BS02 rna 2.1.1.183 GO:0000154 ... P41819 32943521
    32 6zqg:UB (3.5) BS01 rna ? GO:0000028 ... Q99207 32943521
    33 6zqg:UC (3.5) BS01 rna ? GO:0000447 ... Q12136 32943521
    34 6zqg:UN (3.5) BS01 rna ? GO:0000447 ... Q04500 32943521
    35 6zqg:UN (3.5) BS02 rna ? GO:0000447 ... Q04500 32943521
    36 6zqg:UX (3.5) BS01 rna ? GO:0000447 ... Q05498 32943521
    37 6zqg:UX (3.5) BS02 ZN ? GO:0000447 ... Q05498 32943521
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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