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BioLiP
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zqf:CJ (4.9) BS01 rna ? GO:0005515 ... P53941 32943521
    2 6zqf:CK (4.9) BS01 rna ? GO:0000447 ... P47083 32943521
    3 6zqf:CL (4.9) BS01 rna ? GO:0000462 ... Q08965 32943521
    4 6zqf:CN (4.9) BS01 rna ? GO:0000028 ... P25368 32943521
    5 6zqf:DA (4.9) BS01 rna ? GO:0000462 ... P33442 32943521
    6 6zqf:DE (4.9) BS01 rna ? GO:0002181 ... P0CX35 32943521
    7 6zqf:DF (4.9) BS01 rna ? GO:0000028 ... P26783 32943521
    8 6zqf:DG (4.9) BS01 rna ? GO:0000462 ... P0CX37 32943521
    9 6zqf:DH (4.9) BS01 rna ? GO:0002181 ... P26786 32943521
    10 6zqf:DI (4.9) BS01 rna ? GO:0000462 ... P0CX39 32943521
    11 6zqf:DJ (4.9) BS01 rna ? GO:0000462 ... O13516 32943521
    12 6zqf:DL (4.9) BS01 rna ? GO:0000028 ... P0CX47 32943521
    13 6zqf:DN (4.9) BS01 rna ? GO:0000462 ... P05756 32943521
    14 6zqf:DO (4.9) BS01 rna ? GO:0000028 ... P06367 32943521
    15 6zqf:DQ (4.9) BS01 rna ? GO:0000462 ... P0CX51 32943521
    16 6zqf:DS (4.9) BS01 rna ? GO:0000054 ... P0CX55 32943521
    17 6zqf:DT (4.9) BS01 rna ? GO:0000028 ... P07280 32943521
    18 6zqf:DW (4.9) BS01 rna ? GO:0002181 ... P0C0W1 32943521
    19 6zqf:DX (4.9) BS01 rna ? GO:0000462 ... P0CX29 32943521
    20 6zqf:DY (4.9) BS01 rna ? GO:0000462 ... P0CX31 32943521
    21 6zqf:Db (4.9) BS01 rna ? GO:0000028 ... P35997 32943521
    22 6zqf:JD (4.9) BS01 rna 3.6.4.13 GO:0000462 ... Q04217 32943521
    23 6zqf:JJ (4.9) BS01 rna ? GO:0000056 ... Q99216 32943521
    24 6zqf:JL (4.9) BS01 rna 2.1.1.183 GO:0000154 ... P41819 32943521
    25 6zqf:UA (4.9) BS01 rna ? GO:0000028 ... P25635 32943521
    26 6zqf:UA (4.9) BS02 rna ? GO:0000028 ... P25635 32943521
    27 6zqf:UB (4.9) BS01 rna ? GO:0000028 ... Q99207 32943521
    28 6zqf:UC (4.9) BS01 rna ? GO:0000447 ... Q12136 32943521
    29 6zqf:UL (4.9) BS01 rna ? GO:0000447 ... Q12220 32943521
    30 6zqf:UM (4.9) BS01 rna ? GO:0000447 ... Q05946 32943521
    31 6zqf:UU (4.9) BS01 rna ? GO:0003674 ... Q06078 32943521
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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