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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ypu:e (2.9) BS01 rna ? GO:0003723 ... D0CD21 32857965
    2 6ypu:f (2.9) BS01 rna ? GO:0003723 ... D0CD14 32857965
    3 6ypu:f (2.9) BS02 rna ? GO:0003723 ... D0CD14 32857965
    4 6ypu:g (2.9) BS01 rna ? GO:0003735 ... D0C5Z0 32857965
    5 6ypu:i (2.9) BS01 rna ? GO:0003735 ... D0CD11 32857965
    6 6ypu:l (2.9) BS01 rna ? GO:0003735 ... D0CD20 32857965
    7 6ypu:l (2.9) BS02 rna ? GO:0003735 ... D0CD20 32857965
    8 6ypu:m (2.9) BS01 rna ? GO:0000049 ... D0C9P6 32857965
    9 6ypu:p (2.9) BS01 rna ? GO:0003735 ... D0CAU9 32857965
    10 6ypu:q (2.9) BS01 rna ? GO:0003735 ... D0CCR5 32857965
    11 6ypu:r (2.9) BS01 rna ? GO:0003735 ... D0CD06 32857965
    12 6ypu:s (2.9) BS01 rna ? GO:0003735 ... D0C5Y9 32857965
    13 6ypu:u (2.9) BS01 rna ? GO:0003723 ... D0C7N1 32857965
    14 6ypu:u (2.9) BS02 rna ? GO:0003723 ... D0C7N1 32857965
    15 6ypu:v (2.9) BS01 rna ? GO:0003735 ... D0C5Q3 32857965
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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