Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●D-I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●D-QUARK ●DRfold ●DRfold2 ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred ●TCRfinder

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●DeepMSA2 ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP Library
Download all results in tab-seperated text for 71 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6xdr:0 (4.7) BS01 rna ? GO:0002181 ... P0AG48 32820061
    2 6xdr:1 (4.7) BS01 rna ? GO:0002181 ... P61175 32820061
    3 6xdr:2 (4.7) BS01 rna ? GO:0000027 ... P0ADZ0 32820061
    4 6xdr:3 (4.7) BS01 rna ? GO:0000027 ... P60624 32820061
    5 6xdr:4 (4.7) BS01 rna ? GO:0000027 ... P68919 32820061
    6 6xdr:9 (4.7) BS01 rna ? GO:0002181 ... P0A7J3 32820061
    7 6xdr:AA (4.7) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    8 6xdr:AA (4.7) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    9 6xdr:AA (4.7) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    10 6xdr:AB (4.7) BS01 dna ? GO:0005515 ... P0AFG0 32820061
    11 6xdr:AE (4.7) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    12 6xdr:AE (4.7) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    13 6xdr:AE (4.7) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    14 6xdr:AE (4.7) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    15 6xdr:AE (4.7) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    16 6xdr:AE (4.7) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    17 6xdr:C (4.7) BS01 rna ? GO:0002181 ... P0A7T7 32820061
    18 6xdr:E (4.7) BS01 rna ? GO:0000028 ... P0A7U7 32820061
    19 6xdr:F (4.7) BS01 rna ? GO:0000028 ... P68679 32820061
    20 6xdr:G (4.7) BS01 rna ? GO:0000028 ... P0A7V0 32820061
    21 6xdr:I (4.7) BS01 rna ? GO:0000028 ... P0A7V3 32820061
    22 6xdr:I (4.7) BS02 rna ? GO:0000028 ... P0A7V3 32820061
    23 6xdr:J (4.7) BS01 rna ? GO:0000028 ... P0A7V8 32820061
    24 6xdr:K (4.7) BS01 rna ? GO:0000028 ... P0A7W1 32820061
    25 6xdr:K (4.7) BS02 rna ? GO:0000028 ... P0A7W1 32820061
    26 6xdr:L (4.7) BS01 rna ? GO:0002181 ... P02358 32820061
    27 6xdr:M (4.7) BS01 rna ? GO:0000028 ... P02359 32820061
    28 6xdr:M (4.7) BS02 rna ? GO:0000028 ... P02359 32820061
    29 6xdr:N (4.7) BS01 rna ? GO:0000028 ... P0A7W7 32820061
    30 6xdr:O (4.7) BS01 rna ? GO:0000049 ... P0A7X3 32820061
    31 6xdr:P (4.7) BS01 rna ? GO:0000049 ... P0A7R5 32820061
    32 6xdr:Q (4.7) BS01 rna ? GO:0002181 ... P0A7R9 32820061
    33 6xdr:R (4.7) BS01 rna ? GO:0000049 ... P0A7S3 32820061
    34 6xdr:S (4.7) BS01 rna ? GO:0000028 ... P0AG59 32820061
    35 6xdr:T (4.7) BS01 rna ? GO:0000028 ... P0ADZ4 32820061
    36 6xdr:T (4.7) BS02 rna ? GO:0000028 ... P0ADZ4 32820061
    37 6xdr:U (4.7) BS01 rna ? GO:0000028 ... P0A7T3 32820061
    38 6xdr:V (4.7) BS01 rna ? GO:0000028 ... P0AG63 32820061
    39 6xdr:W (4.7) BS01 rna ? GO:0000028 ... P0A7U3 32820061
    40 6xdr:X (4.7) BS01 rna ? GO:0000049 ... P0A7S9 32820061
    41 6xdr:X (4.7) BS02 rna ? GO:0000049 ... P0A7S9 32820061
    42 6xdr:b (4.7) BS01 rna ? GO:0000027 ... P0A7L8 32820061
    43 6xdr:b (4.7) BS02 rna ? GO:0000027 ... P0A7L8 32820061
    44 6xdr:c (4.7) BS01 rna ? GO:0000027 ... P0A7M2 32820061
    45 6xdr:e (4.7) BS01 rna ? GO:0000027 ... P0A7M6 32820061
    46 6xdr:f (4.7) BS01 rna ? GO:0000027 ... P0AG51 32820061
    47 6xdr:f (4.7) BS02 rna ? GO:0000027 ... P0AG51 32820061
    48 6xdr:g (4.7) BS01 rna ? GO:0002181 ... P0A7M9 32820061
    49 6xdr:h (4.7) BS01 rna ? GO:0000027 ... P60422 32820061
    50 6xdr:i (4.7) BS01 rna ? GO:0000027 ... P0A7N4 32820061
    51 6xdr:j (4.7) BS01 rna ? GO:0000027 ... P60438 32820061
    52 6xdr:k (4.7) BS01 rna ? GO:0000027 ... P0A7N9 32820061
    53 6xdr:l (4.7) BS01 rna ? GO:0001070 ... P60723 32820061
    54 6xdr:m (4.7) BS01 rna ? GO:0002181 ... P0A7P5 32820061
    55 6xdr:n (4.7) BS01 rna ? GO:0000027 ... P62399 32820061
    56 6xdr:n (4.7) BS02 rna ? GO:0000027 ... P62399 32820061
    57 6xdr:o (4.7) BS01 rna ? GO:0002181 ... P0A7Q1 32820061
    58 6xdr:p (4.7) BS01 rna ? GO:0000027 ... P0AG55 32820061
    59 6xdr:q (4.7) BS01 rna ? GO:0002181 ... P0A7Q6 32820061
    60 6xdr:r (4.7) BS01 rna ? GO:0002181 ... P0A7R1 32820061
    61 6xdr:s (4.7) BS01 rna ? GO:0002181 ... P0AA10 32820061
    62 6xdr:t (4.7) BS01 rna ? GO:0002181 ... P0ADY3 32820061
    63 6xdr:t (4.7) BS02 rna ? GO:0002181 ... P0ADY3 32820061
    64 6xdr:u (4.7) BS01 rna ? GO:0002181 ... P02413 32820061
    65 6xdr:v (4.7) BS01 rna ? GO:0000027 ... P0ADY7 32820061
    66 6xdr:v (4.7) BS02 rna ? GO:0000027 ... P0ADY7 32820061
    67 6xdr:w (4.7) BS01 rna ? GO:0000027 ... P0AG44 32820061
    68 6xdr:x (4.7) BS01 rna ? GO:0002181 ... P0C018 32820061
    69 6xdr:x (4.7) BS02 rna ? GO:0002181 ... P0C018 32820061
    70 6xdr:y (4.7) BS01 rna ? GO:0000027 ... P0A7K6 32820061
    71 6xdr:z (4.7) BS01 rna ? GO:0000027 ... P0A7L3 32820061
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417