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BioLiP
Download all results in tab-seperated text for 72 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6vyq:0 (3.7) BS01 rna ? GO:0002181 ... P0AG48 32820061
    2 6vyq:1 (3.7) BS01 rna ? GO:0002181 ... P61175 32820061
    3 6vyq:2 (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 32820061
    4 6vyq:3 (3.7) BS01 rna ? GO:0000027 ... P60624 32820061
    5 6vyq:4 (3.7) BS01 rna ? GO:0000027 ... P68919 32820061
    6 6vyq:9 (3.7) BS01 rna ? GO:0002181 ... P0A7J3 32820061
    7 6vyq:AA (3.7) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    8 6vyq:AA (3.7) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    9 6vyq:AA (3.7) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    10 6vyq:AA (3.7) BS04 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    11 6vyq:AB (3.7) BS01 dna ? GO:0005515 ... P0AFG0 32820061
    12 6vyq:AE (3.7) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    13 6vyq:AE (3.7) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    14 6vyq:AE (3.7) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    15 6vyq:AE (3.7) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    16 6vyq:AE (3.7) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    17 6vyq:AE (3.7) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    18 6vyq:C (3.7) BS01 rna ? GO:0002181 ... P0A7T7 32820061
    19 6vyq:E (3.7) BS01 rna ? GO:0000028 ... P0A7U7 32820061
    20 6vyq:F (3.7) BS01 rna ? GO:0000028 ... P68679 32820061
    21 6vyq:G (3.7) BS01 rna ? GO:0000028 ... P0A7V0 32820061
    22 6vyq:I (3.7) BS01 rna ? GO:0000028 ... P0A7V3 32820061
    23 6vyq:I (3.7) BS02 rna ? GO:0000028 ... P0A7V3 32820061
    24 6vyq:J (3.7) BS01 rna ? GO:0000028 ... P0A7V8 32820061
    25 6vyq:K (3.7) BS01 rna ? GO:0000028 ... P0A7W1 32820061
    26 6vyq:K (3.7) BS02 rna ? GO:0000028 ... P0A7W1 32820061
    27 6vyq:L (3.7) BS01 rna ? GO:0002181 ... P02358 32820061
    28 6vyq:M (3.7) BS01 rna ? GO:0000028 ... P02359 32820061
    29 6vyq:M (3.7) BS02 rna ? GO:0000028 ... P02359 32820061
    30 6vyq:N (3.7) BS01 rna ? GO:0000028 ... P0A7W7 32820061
    31 6vyq:O (3.7) BS01 rna ? GO:0000049 ... P0A7X3 32820061
    32 6vyq:P (3.7) BS01 rna ? GO:0000049 ... P0A7R5 32820061
    33 6vyq:Q (3.7) BS01 rna ? GO:0002181 ... P0A7R9 32820061
    34 6vyq:R (3.7) BS01 rna ? GO:0000049 ... P0A7S3 32820061
    35 6vyq:S (3.7) BS01 rna ? GO:0000028 ... P0AG59 32820061
    36 6vyq:T (3.7) BS01 rna ? GO:0000028 ... P0ADZ4 32820061
    37 6vyq:T (3.7) BS02 rna ? GO:0000028 ... P0ADZ4 32820061
    38 6vyq:U (3.7) BS01 rna ? GO:0000028 ... P0A7T3 32820061
    39 6vyq:V (3.7) BS01 rna ? GO:0000028 ... P0AG63 32820061
    40 6vyq:W (3.7) BS01 rna ? GO:0000028 ... P0A7U3 32820061
    41 6vyq:X (3.7) BS01 rna ? GO:0000049 ... P0A7S9 32820061
    42 6vyq:X (3.7) BS02 rna ? GO:0000049 ... P0A7S9 32820061
    43 6vyq:b (3.7) BS01 rna ? GO:0000027 ... P0A7L8 32820061
    44 6vyq:b (3.7) BS02 rna ? GO:0000027 ... P0A7L8 32820061
    45 6vyq:c (3.7) BS01 rna ? GO:0000027 ... P0A7M2 32820061
    46 6vyq:e (3.7) BS01 rna ? GO:0000027 ... P0A7M6 32820061
    47 6vyq:f (3.7) BS01 rna ? GO:0000027 ... P0AG51 32820061
    48 6vyq:f (3.7) BS02 rna ? GO:0000027 ... P0AG51 32820061
    49 6vyq:g (3.7) BS01 rna ? GO:0002181 ... P0A7M9 32820061
    50 6vyq:h (3.7) BS01 rna ? GO:0000027 ... P60422 32820061
    51 6vyq:i (3.7) BS01 rna ? GO:0000027 ... P0A7N4 32820061
    52 6vyq:j (3.7) BS01 rna ? GO:0000027 ... P60438 32820061
    53 6vyq:k (3.7) BS01 rna ? GO:0000027 ... P0A7N9 32820061
    54 6vyq:l (3.7) BS01 rna ? GO:0001070 ... P60723 32820061
    55 6vyq:m (3.7) BS01 rna ? GO:0002181 ... P0A7P5 32820061
    56 6vyq:n (3.7) BS01 rna ? GO:0000027 ... P62399 32820061
    57 6vyq:n (3.7) BS02 rna ? GO:0000027 ... P62399 32820061
    58 6vyq:o (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 32820061
    59 6vyq:p (3.7) BS01 rna ? GO:0000027 ... P0AG55 32820061
    60 6vyq:q (3.7) BS01 rna ? GO:0002181 ... P0A7Q6 32820061
    61 6vyq:r (3.7) BS01 rna ? GO:0002181 ... P0A7R1 32820061
    62 6vyq:s (3.7) BS01 rna ? GO:0002181 ... P0AA10 32820061
    63 6vyq:t (3.7) BS01 rna ? GO:0002181 ... P0ADY3 32820061
    64 6vyq:t (3.7) BS02 rna ? GO:0002181 ... P0ADY3 32820061
    65 6vyq:u (3.7) BS01 rna ? GO:0002181 ... P02413 32820061
    66 6vyq:v (3.7) BS01 rna ? GO:0000027 ... P0ADY7 32820061
    67 6vyq:v (3.7) BS02 rna ? GO:0000027 ... P0ADY7 32820061
    68 6vyq:w (3.7) BS01 rna ? GO:0000027 ... P0AG44 32820061
    69 6vyq:x (3.7) BS01 rna ? GO:0002181 ... P0C018 32820061
    70 6vyq:x (3.7) BS02 rna ? GO:0002181 ... P0C018 32820061
    71 6vyq:y (3.7) BS01 rna ? GO:0000027 ... P0A7K6 32820061
    72 6vyq:z (3.7) BS01 rna ? GO:0000027 ... P0A7L3 32820061
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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