Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6v1z:1 (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    2 6v1z:2 (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    3 6v1z:3 (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    4 6v1z:4 (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    5 6v1z:5 (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    6 6v1z:6 (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    7 6v1z:7 (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    8 6v1z:8 (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    9 6v1z:A (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    10 6v1z:B (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    11 6v1z:C (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    12 6v1z:D (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    13 6v1z:E (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    14 6v1z:F (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    15 6v1z:G (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    16 6v1z:H (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    17 6v1z:I (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    18 6v1z:J (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    19 6v1z:K (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    20 6v1z:L (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    21 6v1z:M (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    22 6v1z:N (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    23 6v1z:O (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    24 6v1z:P (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    25 6v1z:Q (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    26 6v1z:R (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    27 6v1z:S (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    28 6v1z:T (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    29 6v1z:U (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    30 6v1z:V (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    31 6v1z:W (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    32 6v1z:X (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    33 6v1z:Y (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    34 6v1z:Z (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    35 6v1z:a (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    36 6v1z:b (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    37 6v1z:c (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    38 6v1z:d (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    39 6v1z:e (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    40 6v1z:f (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    41 6v1z:g (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    42 6v1z:h (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    43 6v1z:i (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    44 6v1z:j (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    45 6v1z:k (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    46 6v1z:l (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    47 6v1z:m (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    48 6v1z:n (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    49 6v1z:o (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    50 6v1z:p (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    51 6v1z:q (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    52 6v1z:r (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    53 6v1z:s (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    54 6v1z:t (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    55 6v1z:u (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    56 6v1z:v (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    57 6v1z:w (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    58 6v1z:x (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    59 6v1z:y (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    60 6v1z:z (3.58) BS01 DA ? GO:0005198 ... B4Y886 31826994
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218