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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 387 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 6trc:B (2.98) BS23 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    202 6trc:B (2.98) BS24 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    203 6trc:B (2.98) BS25 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    204 6trc:B (2.98) BS26 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    205 6trc:B (2.98) BS27 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    206 6trc:B (2.98) BS28 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    207 6trc:B (2.98) BS29 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    208 6trc:B (2.98) BS30 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    209 6trc:B (2.98) BS31 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    210 6trc:B (2.98) BS32 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    211 6trc:B (2.98) BS33 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    212 6trc:B (2.98) BS34 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    213 6trc:B (2.98) BS35 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    214 6trc:B (2.98) BS36 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    215 6trc:B (2.98) BS37 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    216 6trc:B (2.98) BS38 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    217 6trc:B (2.98) BS39 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    218 6trc:B (2.98) BS40 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    219 6trc:B (2.98) BS41 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    220 6trc:B (2.98) BS42 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    221 6trc:B (2.98) BS43 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    222 6trc:B (2.98) BS44 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    223 6trc:B (2.98) BS45 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    224 6trc:B (2.98) BS46 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    225 6trc:B (2.98) BS47 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    226 6trc:B (2.98) BS48 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    227 6trc:B (2.98) BS49 PQN 1.97.1.12 GO:0000287 ... P0A407 N/A
    228 6trc:C (2.98) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 N/A
    229 6trc:C (2.98) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 N/A
    230 6trc:F (2.98) BS01 peptide ? GO:0009522 ... P0A401 N/A
    231 6trc:F (2.98) BS02 CLA ? GO:0009522 ... P0A401 N/A
    232 6trc:F (2.98) BS03 CLA ? GO:0009522 ... P0A401 N/A
    233 6trc:F (2.98) BS04 CLA ? GO:0009522 ... P0A401 N/A
    234 6trc:F (2.98) BS05 CLA ? GO:0009522 ... P0A401 N/A
    235 6trc:F (2.98) BS06 CLA ? GO:0009522 ... P0A401 N/A
    236 6trc:F (2.98) BS07 CLA ? GO:0009522 ... P0A401 N/A
    237 6trc:I (2.98) BS01 CLA ? GO:0009522 ... P0A427 N/A
    238 6trc:I (2.98) BS02 CLA ? GO:0009522 ... P0A427 N/A
    239 6trc:I (2.98) BS03 CLA ? GO:0009522 ... P0A427 N/A
    240 6trc:I (2.98) BS04 CLA ? GO:0009522 ... P0A427 N/A
    241 6trc:J (2.98) BS01 CLA ? GO:0009522 ... P0A429 N/A
    242 6trc:J (2.98) BS02 CLA ? GO:0009522 ... P0A429 N/A
    243 6trc:J (2.98) BS03 CLA ? GO:0009522 ... P0A429 N/A
    244 6trc:J (2.98) BS04 CLA ? GO:0009522 ... P0A429 N/A
    245 6trc:K (2.98) BS01 CLA ? GO:0009522 ... P0A425 N/A
    246 6trc:K (2.98) BS02 CLA ? GO:0009522 ... P0A425 N/A
    247 6trc:K (2.98) BS03 CLA ? GO:0009522 ... P0A425 N/A
    248 6trc:L (2.98) BS01 CLA ? GO:0009522 ... Q8DGB4 N/A
    249 6trc:L (2.98) BS02 CLA ? GO:0009522 ... Q8DGB4 N/A
    250 6trc:L (2.98) BS03 CLA ? GO:0009522 ... Q8DGB4 N/A
    251 6trc:L (2.98) BS04 CA ? GO:0009522 ... Q8DGB4 N/A
    252 6trc:L (2.98) BS05 CLA ? GO:0009522 ... Q8DGB4 N/A
    253 6trc:L (2.98) BS06 CLA ? GO:0009522 ... Q8DGB4 N/A
    254 6trc:L (2.98) BS07 CLA ? GO:0009522 ... Q8DGB4 N/A
    255 6trc:L (2.98) BS08 CLA ? GO:0009522 ... Q8DGB4 N/A
    256 6trc:L (2.98) BS09 CLA ? GO:0009522 ... Q8DGB4 N/A
    257 6trc:M (2.98) BS01 CLA ? GO:0009522 ... P0A403 N/A
    258 6trc:a (2.98) BS01 CL0 1.97.1.12 GO:0000287 ... P0A405 N/A
    259 6trc:a (2.98) BS02 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    260 6trc:a (2.98) BS03 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    261 6trc:a (2.98) BS04 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    262 6trc:a (2.98) BS05 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    263 6trc:a (2.98) BS06 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    264 6trc:a (2.98) BS07 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    265 6trc:a (2.98) BS08 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    266 6trc:a (2.98) BS09 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    267 6trc:a (2.98) BS10 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    268 6trc:a (2.98) BS11 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    269 6trc:a (2.98) BS12 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    270 6trc:a (2.98) BS13 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    271 6trc:a (2.98) BS14 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    272 6trc:a (2.98) BS15 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    273 6trc:a (2.98) BS16 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    274 6trc:a (2.98) BS17 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    275 6trc:a (2.98) BS18 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    276 6trc:a (2.98) BS19 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    277 6trc:a (2.98) BS20 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    278 6trc:a (2.98) BS21 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    279 6trc:a (2.98) BS22 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    280 6trc:a (2.98) BS23 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    281 6trc:a (2.98) BS24 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    282 6trc:a (2.98) BS25 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    283 6trc:a (2.98) BS26 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    284 6trc:a (2.98) BS27 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    285 6trc:a (2.98) BS28 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    286 6trc:a (2.98) BS29 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    287 6trc:a (2.98) BS30 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    288 6trc:a (2.98) BS31 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    289 6trc:a (2.98) BS32 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    290 6trc:a (2.98) BS33 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    291 6trc:a (2.98) BS34 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    292 6trc:a (2.98) BS35 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    293 6trc:a (2.98) BS36 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    294 6trc:a (2.98) BS37 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    295 6trc:a (2.98) BS38 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    296 6trc:a (2.98) BS39 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    297 6trc:a (2.98) BS40 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    298 6trc:a (2.98) BS41 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    299 6trc:a (2.98) BS42 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    300 6trc:a (2.98) BS43 PQN 1.97.1.12 GO:0000287 ... P0A405 N/A
    301 6trc:a (2.98) BS44 SF4 1.97.1.12 GO:0000287 ... P0A405 N/A
    302 6trc:a (2.98) BS45 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    303 6trc:a (2.98) BS46 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    304 6trc:a (2.98) BS47 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    305 6trc:a (2.98) BS48 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    306 6trc:a (2.98) BS49 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    307 6trc:a (2.98) BS50 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    308 6trc:b (2.98) BS01 peptide 1.97.1.12 GO:0000287 ... P0A407 N/A
    309 6trc:b (2.98) BS02 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    310 6trc:b (2.98) BS03 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    311 6trc:b (2.98) BS04 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    312 6trc:b (2.98) BS05 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    313 6trc:b (2.98) BS06 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    314 6trc:b (2.98) BS07 SF4 1.97.1.12 GO:0000287 ... P0A407 N/A
    315 6trc:b (2.98) BS08 CA 1.97.1.12 GO:0000287 ... P0A407 N/A
    316 6trc:b (2.98) BS09 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    317 6trc:b (2.98) BS10 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    318 6trc:b (2.98) BS11 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    319 6trc:b (2.98) BS12 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    320 6trc:b (2.98) BS13 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    321 6trc:b (2.98) BS14 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    322 6trc:b (2.98) BS15 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    323 6trc:b (2.98) BS16 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    324 6trc:b (2.98) BS17 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    325 6trc:b (2.98) BS18 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    326 6trc:b (2.98) BS19 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    327 6trc:b (2.98) BS20 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    328 6trc:b (2.98) BS21 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    329 6trc:b (2.98) BS22 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    330 6trc:b (2.98) BS23 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    331 6trc:b (2.98) BS24 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    332 6trc:b (2.98) BS25 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    333 6trc:b (2.98) BS26 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    334 6trc:b (2.98) BS27 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    335 6trc:b (2.98) BS28 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    336 6trc:b (2.98) BS29 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    337 6trc:b (2.98) BS30 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    338 6trc:b (2.98) BS31 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    339 6trc:b (2.98) BS32 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    340 6trc:b (2.98) BS33 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    341 6trc:b (2.98) BS34 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    342 6trc:b (2.98) BS35 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    343 6trc:b (2.98) BS36 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    344 6trc:b (2.98) BS37 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    345 6trc:b (2.98) BS38 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    346 6trc:b (2.98) BS39 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    347 6trc:b (2.98) BS40 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    348 6trc:b (2.98) BS41 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    349 6trc:b (2.98) BS42 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    350 6trc:b (2.98) BS43 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    351 6trc:b (2.98) BS44 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    352 6trc:b (2.98) BS45 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    353 6trc:b (2.98) BS46 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    354 6trc:b (2.98) BS47 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    355 6trc:b (2.98) BS48 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    356 6trc:b (2.98) BS49 PQN 1.97.1.12 GO:0000287 ... P0A407 N/A
    357 6trc:c (2.98) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 N/A
    358 6trc:c (2.98) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 N/A
    359 6trc:f (2.98) BS01 peptide ? GO:0009522 ... P0A401 N/A
    360 6trc:f (2.98) BS02 CLA ? GO:0009522 ... P0A401 N/A
    361 6trc:f (2.98) BS03 CLA ? GO:0009522 ... P0A401 N/A
    362 6trc:f (2.98) BS04 CLA ? GO:0009522 ... P0A401 N/A
    363 6trc:f (2.98) BS05 CLA ? GO:0009522 ... P0A401 N/A
    364 6trc:f (2.98) BS06 CLA ? GO:0009522 ... P0A401 N/A
    365 6trc:f (2.98) BS07 CLA ? GO:0009522 ... P0A401 N/A
    366 6trc:i (2.98) BS01 CLA ? GO:0009522 ... P0A427 N/A
    367 6trc:i (2.98) BS02 CLA ? GO:0009522 ... P0A427 N/A
    368 6trc:i (2.98) BS03 CLA ? GO:0009522 ... P0A427 N/A
    369 6trc:i (2.98) BS04 CLA ? GO:0009522 ... P0A427 N/A
    370 6trc:j (2.98) BS01 CLA ? GO:0009522 ... P0A429 N/A
    371 6trc:j (2.98) BS02 CLA ? GO:0009522 ... P0A429 N/A
    372 6trc:j (2.98) BS03 CLA ? GO:0009522 ... P0A429 N/A
    373 6trc:j (2.98) BS04 CLA ? GO:0009522 ... P0A429 N/A
    374 6trc:k (2.98) BS01 CLA ? GO:0009522 ... P0A425 N/A
    375 6trc:k (2.98) BS02 CLA ? GO:0009522 ... P0A425 N/A
    376 6trc:k (2.98) BS03 CLA ? GO:0009522 ... P0A425 N/A
    377 6trc:l (2.98) BS01 CLA ? GO:0009522 ... Q8DGB4 N/A
    378 6trc:l (2.98) BS02 CLA ? GO:0009522 ... Q8DGB4 N/A
    379 6trc:l (2.98) BS03 CLA ? GO:0009522 ... Q8DGB4 N/A
    380 6trc:l (2.98) BS04 CLA ? GO:0009522 ... Q8DGB4 N/A
    381 6trc:l (2.98) BS05 CA ? GO:0009522 ... Q8DGB4 N/A
    382 6trc:l (2.98) BS06 CLA ? GO:0009522 ... Q8DGB4 N/A
    383 6trc:l (2.98) BS07 CLA ? GO:0009522 ... Q8DGB4 N/A
    384 6trc:l (2.98) BS08 CLA ? GO:0009522 ... Q8DGB4 N/A
    385 6trc:l (2.98) BS09 CLA ? GO:0009522 ... Q8DGB4 N/A
    386 6trc:m (2.98) BS01 CLA ? GO:0009522 ... P0A403 N/A
    387 6trc:y (2.98) BS01 CLA ? GO:0009522 ... P0A403 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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