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BioLiP
Download all results in tab-seperated text for 51 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6rxx:CB (7.1) BS01 rna ? GO:0000494 ... G0SGY2 31378463
    2 6rxx:CD (7.1) BS01 rna ? GO:0005634 ... G0RYF6 31378463
    3 6rxx:CE (7.1) BS01 rna ? GO:0000398 ... G0SGM0 31378463
    4 6rxx:CF (7.1) BS01 rna ? GO:0000398 ... G0SGM0 31378463
    5 6rxx:CG (7.1) BS01 rna ? GO:0005634 ... G0SG51 31378463
    6 6rxx:CH (7.1) BS01 rna ? GO:0000479 ... G0S0B1 31378463
    7 6rxx:CI (7.1) BS01 rna ? GO:0000462 ... G0S445 31378463
    8 6rxx:CJ (7.1) BS01 rna ? GO:0003723 ... G0SDL4 31378463
    9 6rxx:CJ (7.1) BS02 rna ? GO:0003723 ... G0SDL4 31378463
    10 6rxx:CK (7.1) BS01 rna ? GO:0005730 ... G0SE90 31378463
    11 6rxx:CL (7.1) BS01 rna ? GO:0005634 ... G0S9I7 31378463
    12 6rxx:CM (7.1) BS01 rna ? GO:0000462 ... G0RY94 31378463
    13 6rxx:CM (7.1) BS02 rna ? GO:0000462 ... G0RY94 31378463
    14 6rxx:CN (7.1) BS01 rna ? GO:0005730 ... G0SAY9 31378463
    15 6rxx:CP (7.1) BS01 rna ? GO:0003676 ... G0S3V7 31378463
    16 6rxx:CQ (7.1) BS01 rna ? GO:0003676 ... G0S3T2 31378463
    17 6rxx:CR (7.1) BS01 rna 2.3.1.- GO:0000049 ... G0S273 31378463
    18 6rxx:CT (7.1) BS01 rna ? GO:0003723 ... G0S4E3 31378463
    19 6rxx:CT (7.1) BS02 rna ? GO:0003723 ... G0S4E3 31378463
    20 6rxx:CU (7.1) BS01 rna ? GO:0000462 ... G0S5F1 31378463
    21 6rxx:CW (7.1) BS01 rna ? GO:0000462 ... G0S902 31378463
    22 6rxx:Ca (7.1) BS01 rna ? GO:0003735 ... G0S7T8 31378463
    23 6rxx:Cb (7.1) BS01 rna ? GO:0003723 ... G0S1A6 31378463
    24 6rxx:Cc (7.1) BS01 rna ? GO:0000028 ... G0S1Z0 31378463
    25 6rxx:Cd (7.1) BS01 rna ? GO:0003735 ... G0RY43 31378463
    26 6rxx:Cf (7.1) BS01 rna ? GO:0000462 ... G0RY45 31378463
    27 6rxx:Cg (7.1) BS01 rna ? GO:0003723 ... G0S0Z4 31378463
    28 6rxx:Ch (7.1) BS01 rna ? GO:0003735 ... G0RZM9 31378463
    29 6rxx:Ci (7.1) BS01 rna ? GO:0000028 ... G0SFL1 31378463
    30 6rxx:Cj (7.1) BS01 rna ? GO:0000462 ... G0SBR7 31378463
    31 6rxx:Ck (7.1) BS01 rna ? GO:0003735 ... G0SF00 31378463
    32 6rxx:Cn (7.1) BS01 rna ? GO:0003735 ... G0RY17 31378463
    33 6rxx:Co (7.1) BS01 rna ? GO:0003735 ... P0CU28 31378463
    34 6rxx:Cp (7.1) BS01 rna ? GO:0000028 ... G0S9M9 31378463
    35 6rxx:Cq (7.1) BS01 rna ? GO:0000028 ... G0S1S4 31378463
    36 6rxx:Cr (7.1) BS01 rna ? GO:0000028 ... G0SFK8 31378463
    37 6rxx:UA (7.1) BS01 rna ? GO:0000028 ... G0SF93 31378463
    38 6rxx:UA (7.1) BS02 rna ? GO:0000028 ... G0SF93 31378463
    39 6rxx:UB (7.1) BS01 rna ? GO:0005634 ... G0SDW0 31378463
    40 6rxx:UC (7.1) BS01 rna ? GO:0000462 ... G0S4H3 31378463
    41 6rxx:UD (7.1) BS01 rna ? GO:0000462 ... G0SCT7 31378463
    42 6rxx:UG (7.1) BS01 rna ? GO:0000462 ... G0RZ99 31378463
    43 6rxx:UH (7.1) BS01 rna ? GO:0005634 ... P0CT47 31378463
    44 6rxx:UK (7.1) BS01 rna ? GO:0005634 ... G0SF32 31378463
    45 6rxx:UL (7.1) BS01 rna ? GO:0005634 ... G0RZL9 31378463
    46 6rxx:UM (7.1) BS01 rna ? GO:0000472 ... G0SG95 31378463
    47 6rxx:UQ (7.1) BS01 rna ? GO:0003723 ... G0SCS8 31378463
    48 6rxx:UT (7.1) BS01 rna ? GO:0005730 ... G0SHP3 31378463
    49 6rxx:UU (7.1) BS01 rna ? GO:0006364 ... G0S872 31378463
    50 6rxx:UV (7.1) BS01 rna ? GO:0003723 ... G0S2E0 31378463
    51 6rxx:UX (7.1) BS01 rna N/A GO:0032040 ... N/A 31378463
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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