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BioLiP
Download all results in tab-seperated text for 261 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 6of1:2P (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 30936109
    202 6of1:2Q (2.8) BS01 rna ? GO:0000049 ... P60489 30936109
    203 6of1:2Q (2.8) BS02 rna ? GO:0000049 ... P60489 30936109
    204 6of1:2Q (2.8) BS03 rna ? GO:0000049 ... P60489 30936109
    205 6of1:2Q (2.8) BS04 MG ? GO:0000049 ... P60489 30936109
    206 6of1:2Q (2.8) BS05 MG ? GO:0000049 ... P60489 30936109
    207 6of1:2Q (2.8) BS06 MG ? GO:0000049 ... P60489 30936109
    208 6of1:2R (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 30936109
    209 6of1:2S (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 30936109
    210 6of1:2S (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 30936109
    211 6of1:2T (2.8) BS01 rna ? GO:0003735 ... P60490 30936109
    212 6of1:2T (2.8) BS02 rna ? GO:0003735 ... P60490 30936109
    213 6of1:2T (2.8) BS03 MG ? GO:0003735 ... P60490 30936109
    214 6of1:2U (2.8) BS01 rna ? GO:0000027 ... P60491 30936109
    215 6of1:2U (2.8) BS02 MG ? GO:0000027 ... P60491 30936109
    216 6of1:2U (2.8) BS03 MG ? GO:0000027 ... P60491 30936109
    217 6of1:2V (2.8) BS01 rna ? GO:0003723 ... P60492 30936109
    218 6of1:2V (2.8) BS02 MG ? GO:0003723 ... P60492 30936109
    219 6of1:2V (2.8) BS03 MG ? GO:0003723 ... P60492 30936109
    220 6of1:2V (2.8) BS04 MG ? GO:0003723 ... P60492 30936109
    221 6of1:2W (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 30936109
    222 6of1:2W (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 30936109
    223 6of1:2W (2.8) BS03 MG ? GO:0003735 ... Q5SHP3 30936109
    224 6of1:2X (2.8) BS01 rna ? GO:0000027 ... Q5SHP0 30936109
    225 6of1:2X (2.8) BS02 MG ? GO:0000027 ... Q5SHP0 30936109
    226 6of1:2Y (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 30936109
    227 6of1:2Y (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 30936109
    228 6of1:2Z (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 30936109
    229 6of1:2Z (2.8) BS02 MG ? GO:0003723 ... Q5SHZ1 30936109
    230 6of1:2b (2.8) BS01 rna ? GO:0003735 ... P80371 30936109
    231 6of1:2c (2.8) BS01 rna ? GO:0003676 ... P80372 30936109
    232 6of1:2d (2.8) BS01 rna ? GO:0003723 ... P80373 30936109
    233 6of1:2d (2.8) BS02 MG ? GO:0003723 ... P80373 30936109
    234 6of1:2d (2.8) BS03 SF4 ? GO:0003723 ... P80373 30936109
    235 6of1:2e (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 30936109
    236 6of1:2e (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 30936109
    237 6of1:2f (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 30936109
    238 6of1:2f (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 30936109
    239 6of1:2g (2.8) BS01 rna ? GO:0000028 ... P17291 30936109
    240 6of1:2g (2.8) BS02 rna ? GO:0000028 ... P17291 30936109
    241 6of1:2h (2.8) BS01 rna ? GO:0003735 ... P0DOY9 30936109
    242 6of1:2i (2.8) BS01 rna ? GO:0000049 ... P80374 30936109
    243 6of1:2i (2.8) BS02 rna ? GO:0000049 ... P80374 30936109
    244 6of1:2j (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 30936109
    245 6of1:2k (2.8) BS01 rna ? GO:0003735 ... P80376 30936109
    246 6of1:2k (2.8) BS02 MG ? GO:0003735 ... P80376 30936109
    247 6of1:2l (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 30936109
    248 6of1:2l (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 30936109
    249 6of1:2l (2.8) BS03 MG ? GO:0000049 ... Q5SHN3 30936109
    250 6of1:2m (2.8) BS01 rna ? GO:0000049 ... P80377 30936109
    251 6of1:2n (2.8) BS01 rna ? GO:0003735 ... P0DOY6 30936109
    252 6of1:2n (2.8) BS02 ZN ? GO:0003735 ... P0DOY6 30936109
    253 6of1:2o (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 30936109
    254 6of1:2o (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 30936109
    255 6of1:2p (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 30936109
    256 6of1:2q (2.8) BS01 rna ? GO:0003735 ... P0DOY7 30936109
    257 6of1:2q (2.8) BS02 MG ? GO:0003735 ... P0DOY7 30936109
    258 6of1:2q (2.8) BS03 MG ? GO:0003735 ... P0DOY7 30936109
    259 6of1:2r (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 30936109
    260 6of1:2s (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 30936109
    261 6of1:2t (2.8) BS01 rna ? GO:0003723 ... P80380 30936109
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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