Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 100 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ip8:1D (3.9) BS01 rna ? GO:0002181 ... P62917 31080011
    2 6ip8:1D (3.9) BS02 rna ? GO:0002181 ... P62917 31080011
    3 6ip8:1E (3.9) BS01 rna ? GO:0002181 ... P39023 31080011
    4 6ip8:1F (3.9) BS01 rna ? GO:0002181 ... P36578 31080011
    5 6ip8:1F (3.9) BS02 rna ? GO:0002181 ... P36578 31080011
    6 6ip8:1G (3.9) BS01 rna ? GO:0000027 ... P46777 31080011
    7 6ip8:1G (3.9) BS02 rna ? GO:0000027 ... P46777 31080011
    8 6ip8:1H (3.9) BS01 rna ? GO:0000027 ... Q02878 31080011
    9 6ip8:20 (3.9) BS01 rna ? GO:0000028 ... P39019 31080011
    10 6ip8:21 (3.9) BS01 rna ? GO:0002181 ... P60866 31080011
    11 6ip8:2A (3.9) BS01 rna ? GO:0000463 ... P18124 31080011
    12 6ip8:2A (3.9) BS02 rna ? GO:0000463 ... P18124 31080011
    13 6ip8:2B (3.9) BS01 rna ? GO:0000470 ... P62424 31080011
    14 6ip8:2B (3.9) BS02 rna ? GO:0000470 ... P62424 31080011
    15 6ip8:2C (3.9) BS01 rna ? GO:0002181 ... P32969 31080011
    16 6ip8:2D (3.9) BS01 rna ? GO:0000027 ... Q96L21 31080011
    17 6ip8:2D (3.9) BS02 rna ? GO:0000027 ... Q96L21 31080011
    18 6ip8:2D (3.9) BS03 rna ? GO:0000027 ... Q96L21 31080011
    19 6ip8:2E (3.9) BS01 rna ? GO:0000027 ... P62913 31080011
    20 6ip8:2E (3.9) BS02 rna ? GO:0000027 ... P62913 31080011
    21 6ip8:2E (3.9) BS03 rna ? GO:0000027 ... P62913 31080011
    22 6ip8:2F (3.9) BS01 rna ? GO:0001824 ... P26373 31080011
    23 6ip8:2F (3.9) BS02 rna ? GO:0001824 ... P26373 31080011
    24 6ip8:2G (3.9) BS01 rna ? GO:0002181 ... P50914 31080011
    25 6ip8:2H (3.9) BS01 rna ? GO:0002181 ... P61313 31080011
    26 6ip8:2H (3.9) BS02 rna ? GO:0002181 ... P61313 31080011
    27 6ip8:2I (3.9) BS01 rna ? GO:0002181 ... P40429 31080011
    28 6ip8:2J (3.9) BS01 rna ? GO:0002181 ... P18621 31080011
    29 6ip8:2J (3.9) BS02 rna ? GO:0002181 ... P18621 31080011
    30 6ip8:2K (3.9) BS01 rna ? GO:0002181 ... Q07020 31080011
    31 6ip8:2L (3.9) BS01 rna ? GO:0002181 ... P84098 31080011
    32 6ip8:2L (3.9) BS02 rna ? GO:0002181 ... P84098 31080011
    33 6ip8:2M (3.9) BS01 rna ? GO:0002181 ... Q02543 31080011
    34 6ip8:2M (3.9) BS02 rna ? GO:0002181 ... Q02543 31080011
    35 6ip8:2N (3.9) BS01 rna ? GO:0002181 ... P46778 31080011
    36 6ip8:2N (3.9) BS02 rna ? GO:0002181 ... P46778 31080011
    37 6ip8:2O (3.9) BS01 rna ? GO:0002181 ... P35268 31080011
    38 6ip8:2P (3.9) BS01 rna ? GO:0000122 ... P62829 31080011
    39 6ip8:2Q (3.9) BS01 rna ? GO:0000027 ... P83731 31080011
    40 6ip8:2Q (3.9) BS02 rna ? GO:0000027 ... P83731 31080011
    41 6ip8:2R (3.9) BS01 rna ? GO:0000027 ... P62750 31080011
    42 6ip8:2R (3.9) BS02 rna ? GO:0000027 ... P62750 31080011
    43 6ip8:2S (3.9) BS01 rna ? GO:0002181 ... P61254 31080011
    44 6ip8:2S (3.9) BS02 rna ? GO:0002181 ... P61254 31080011
    45 6ip8:2T (3.9) BS01 rna ? GO:0002181 ... P61353 31080011
    46 6ip8:2U (3.9) BS01 rna ? GO:0002181 ... P46776 31080011
    47 6ip8:2V (3.9) BS01 rna ? GO:0002181 ... P47914 31080011
    48 6ip8:2W (3.9) BS01 rna ? GO:0002181 ... P62888 31080011
    49 6ip8:2X (3.9) BS01 rna ? GO:0002181 ... P62899 31080011
    50 6ip8:2Y (3.9) BS01 rna ? GO:0002181 ... P62910 31080011
    51 6ip8:2Z (3.9) BS01 rna ? GO:0000049 ... P18077 31080011
    52 6ip8:2a (3.9) BS01 rna ? GO:0002181 ... P49207 31080011
    53 6ip8:2b (3.9) BS01 rna ? GO:0000463 ... P42766 31080011
    54 6ip8:2b (3.9) BS02 rna ? GO:0000463 ... P42766 31080011
    55 6ip8:2c (3.9) BS01 rna ? GO:0002181 ... Q9Y3U8 31080011
    56 6ip8:2d (3.9) BS01 rna ? GO:0002181 ... P61927 31080011
    57 6ip8:2d (3.9) BS02 rna ? GO:0002181 ... P61927 31080011
    58 6ip8:2e (3.9) BS01 rna ? GO:0001501 ... P63173 31080011
    59 6ip8:2f (3.9) BS01 rna ? GO:0002181 ... P62891 31080011
    60 6ip8:2f (3.9) BS02 rna ? GO:0002181 ... P62891 31080011
    61 6ip8:2g (3.9) BS01 rna ? GO:0002181 ... P62987 31080011
    62 6ip8:2i (3.9) BS01 rna ? GO:0002181 ... P83881 31080011
    63 6ip8:2j (3.9) BS01 rna ? GO:0002181 ... P61513 31080011
    64 6ip8:2k (3.9) BS01 rna ? GO:0002181 ... P46779 31080011
    65 6ip8:2n (3.9) BS01 rna ? GO:0000028 ... P08865 31080011
    66 6ip8:2o (3.9) BS01 rna ? GO:0002181 ... P61247 31080011
    67 6ip8:2o (3.9) BS02 rna ? GO:0002181 ... P61247 31080011
    68 6ip8:2p (3.9) BS01 rna 4.2.99.18 GO:0000977 ... P23396 31080011
    69 6ip8:2q (3.9) BS01 rna ? GO:0002181 ... P62701 31080011
    70 6ip8:2r (3.9) BS01 rna ? GO:0000028 ... P46782 31080011
    71 6ip8:2s (3.9) BS01 rna ? GO:0001843 ... P62081 31080011
    72 6ip8:2t (3.9) BS01 rna ? GO:0000462 ... P62241 31080011
    73 6ip8:2t (3.9) BS02 rna ? GO:0000462 ... P62241 31080011
    74 6ip8:2u (3.9) BS01 rna ? GO:0002181 ... P46783 31080011
    75 6ip8:2v (3.9) BS01 rna ? GO:0002181 ... P62280 31080011
    76 6ip8:2w (3.9) BS01 rna ? GO:0000028 ... P62841 31080011
    77 6ip8:2x (3.9) BS01 rna ? GO:0000462 ... P62249 31080011
    78 6ip8:2y (3.9) BS01 rna ? GO:0002181 ... P08708 31080011
    79 6ip8:2z (3.9) BS01 rna ? GO:0002181 ... P62269 31080011
    80 6ip8:3B (3.9) BS01 rna ? GO:0002181 ... P62266 31080011
    81 6ip8:3C (3.9) BS01 rna ? GO:0002181 ... P62854 31080011
    82 6ip8:3D (3.9) BS01 rna ? GO:0000028 ... P62857 31080011
    83 6ip8:3E (3.9) BS01 rna ? GO:0002181 ... P62273 31080011
    84 6ip8:3F (3.9) BS01 rna ? GO:0001891 ... P63244 31080011
    85 6ip8:3G (3.9) BS01 rna ? GO:0002181 ... P15880 31080011
    86 6ip8:3H (3.9) BS01 rna ? GO:0000082 ... P62753 31080011
    87 6ip8:3I (3.9) BS01 rna ? GO:0002181 ... P46781 31080011
    88 6ip8:3J (3.9) BS01 rna ? GO:0002181 ... P25398 31080011
    89 6ip8:3K (3.9) BS01 rna ? GO:0002181 ... P62277 31080011
    90 6ip8:3L (3.9) BS01 rna ? GO:0000028 ... P62263 31080011
    91 6ip8:3M (3.9) BS01 rna ? GO:0002181 ... P62244 31080011
    92 6ip8:3N (3.9) BS01 rna ? GO:0002181 ... P62847 31080011
    93 6ip8:3O (3.9) BS01 rna ? GO:0002181 ... P62851 31080011
    94 6ip8:3P (3.9) BS01 rna ? GO:0000028 ... P42677 31080011
    95 6ip8:3P (3.9) BS02 rna ? GO:0000028 ... P42677 31080011
    96 6ip8:3Q (3.9) BS01 rna ? GO:0003735 ... P62861 31080011
    97 6ip8:3R (3.9) BS01 rna ? GO:0002181 ... P62979 31080011
    98 6ip8:zw (3.9) BS01 rna ? GO:0000184 ... P62495 31080011
    99 6ip8:zw (3.9) BS02 rna ? GO:0000184 ... P62495 31080011
    100 6ip8:zw (3.9) BS03 rna ? GO:0000184 ... P62495 31080011
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218