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BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6gxo:0 (3.9) BS01 rna ? GO:0000027 ... P0A7N4 30076302
    2 6gxo:1 (3.9) BS01 rna ? GO:0000027 ... P0A7N9 30076302
    3 6gxo:2 (3.9) BS01 rna ? GO:0002181 ... P0A7P5 30076302
    4 6gxo:3 (3.9) BS01 rna ? GO:0002181 ... P0A7Q1 30076302
    5 6gxo:4 (3.9) BS01 rna ? GO:0002181 ... P0A7Q6 30076302
    6 6gxo:5 (3.9) BS01 rna ? GO:0003735 ... P0A7J3 30076302
    7 6gxo:C (3.9) BS01 rna ? GO:0000027 ... P60422 30076302
    8 6gxo:C (3.9) BS02 rna ? GO:0000027 ... P60422 30076302
    9 6gxo:D (3.9) BS01 rna ? GO:0000027 ... P60438 30076302
    10 6gxo:E (3.9) BS01 rna ? GO:0001070 ... P60723 30076302
    11 6gxo:F (3.9) BS01 rna ? GO:0000027 ... P62399 30076302
    12 6gxo:F (3.9) BS02 rna ? GO:0000027 ... P62399 30076302
    13 6gxo:G (3.9) BS01 rna ? GO:0000027 ... P0AG55 30076302
    14 6gxo:H (3.9) BS01 rna ? GO:0002181 ... P0A7R1 30076302
    15 6gxo:I (3.9) BS01 rna ? GO:0000027 ... P0A7J7 30076302
    16 6gxo:J (3.9) BS01 rna ? GO:0002181 ... P0AA10 30076302
    17 6gxo:K (3.9) BS01 rna ? GO:0002181 ... P0ADY3 30076302
    18 6gxo:K (3.9) BS02 rna ? GO:0002181 ... P0ADY3 30076302
    19 6gxo:L (3.9) BS01 rna ? GO:0002181 ... P02413 30076302
    20 6gxo:M (3.9) BS01 rna ? GO:0000027 ... P0ADY7 30076302
    21 6gxo:M (3.9) BS02 rna ? GO:0000027 ... P0ADY7 30076302
    22 6gxo:N (3.9) BS01 rna ? GO:0000027 ... P0AG44 30076302
    23 6gxo:O (3.9) BS01 rna ? GO:0002181 ... P0C018 30076302
    24 6gxo:O (3.9) BS02 rna ? GO:0002181 ... P0C018 30076302
    25 6gxo:P (3.9) BS01 rna ? GO:0000027 ... P0A7K6 30076302
    26 6gxo:P (3.9) BS02 rna ? GO:0000027 ... P0A7K6 30076302
    27 6gxo:Q (3.9) BS01 rna ? GO:0000027 ... P0A7L3 30076302
    28 6gxo:R (3.9) BS01 rna ? GO:0002181 ... P0AG48 30076302
    29 6gxo:S (3.9) BS01 rna ? GO:0002181 ... P61175 30076302
    30 6gxo:T (3.9) BS01 rna ? GO:0000027 ... P0ADZ0 30076302
    31 6gxo:U (3.9) BS01 rna ? GO:0000027 ... P60624 30076302
    32 6gxo:V (3.9) BS01 rna ? GO:0000027 ... P68919 30076302
    33 6gxo:W (3.9) BS01 rna ? GO:0003735 ... P0A7L8 30076302
    34 6gxo:W (3.9) BS02 rna ? GO:0003735 ... P0A7L8 30076302
    35 6gxo:X (3.9) BS01 rna ? GO:0000027 ... P0A7M2 30076302
    36 6gxo:Y (3.9) BS01 rna ? GO:0000027 ... P0A7M6 30076302
    37 6gxo:Z (3.9) BS01 rna ? GO:0000027 ... P0AG51 30076302
    38 6gxo:Z (3.9) BS02 rna ? GO:0000027 ... P0AG51 30076302
    39 6gxo:b (3.9) BS01 rna ? GO:0000028 ... P0A7V0 30076302
    40 6gxo:c (3.9) BS01 rna ? GO:0003676 ... P0A7V3 30076302
    41 6gxo:d (3.9) BS01 rna ? GO:0000028 ... P0A7V8 30076302
    42 6gxo:e (3.9) BS01 rna ? GO:0000028 ... P0A7W1 30076302
    43 6gxo:f (3.9) BS01 rna ? GO:0003735 ... P02358 30076302
    44 6gxo:g (3.9) BS01 rna ? GO:0003723 ... P02359 30076302
    45 6gxo:h (3.9) BS01 rna ? GO:0000028 ... P0A7W7 30076302
    46 6gxo:i (3.9) BS01 rna ? GO:0000049 ... P0A7X3 30076302
    47 6gxo:j (3.9) BS01 rna ? GO:0000049 ... P0A7R5 30076302
    48 6gxo:k (3.9) BS01 rna ? GO:0002181 ... P0A7R9 30076302
    49 6gxo:l (3.9) BS01 rna ? GO:0000049 ... P0A7S3 30076302
    50 6gxo:m (3.9) BS01 rna ? GO:0000049 ... P0A7S9 30076302
    51 6gxo:n (3.9) BS01 rna ? GO:0003735 ... P0AG59 30076302
    52 6gxo:o (3.9) BS01 rna ? GO:0000028 ... P0ADZ4 30076302
    53 6gxo:o (3.9) BS02 rna ? GO:0000028 ... P0ADZ4 30076302
    54 6gxo:p (3.9) BS01 rna ? GO:0000028 ... P0A7T3 30076302
    55 6gxo:q (3.9) BS01 rna ? GO:0000028 ... P0AG63 30076302
    56 6gxo:r (3.9) BS01 rna ? GO:0003735 ... P0A7T7 30076302
    57 6gxo:s (3.9) BS01 rna ? GO:0003723 ... P0A7U3 30076302
    58 6gxo:t (3.9) BS01 rna ? GO:0000028 ... P0A7U7 30076302
    59 6gxo:u (3.9) BS01 rna ? GO:0000028 ... P68679 30076302
    60 6gxo:v (3.9) BS01 rna ? GO:0003747 ... P0A7I0 30076302
    61 6gxo:v (3.9) BS02 rna ? GO:0003747 ... P0A7I0 30076302
    62 6gxo:v (3.9) BS03 rna ? GO:0003747 ... P0A7I0 30076302
    63 6gxo:w (3.9) BS01 rna ? GO:0003924 ... P0A7I4 30076302
    64 6gxo:w (3.9) BS02 rna ? GO:0003924 ... P0A7I4 30076302
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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