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BioLiP
Download all results in tab-seperated text for 241 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 6fkr:2V (3.2) BS01 rna ? GO:0003723 ... P60492 29526712
    202 6fkr:2V (3.2) BS02 MG ? GO:0003723 ... P60492 29526712
    203 6fkr:2V (3.2) BS03 MG ? GO:0003723 ... P60492 29526712
    204 6fkr:2V (3.2) BS04 MG ? GO:0003723 ... P60492 29526712
    205 6fkr:2W (3.2) BS01 rna ? GO:0003735 ... Q5SHP3 29526712
    206 6fkr:2X (3.2) BS01 rna ? GO:0000027 ... Q5SHP0 29526712
    207 6fkr:2X (3.2) BS02 MG ? GO:0000027 ... Q5SHP0 29526712
    208 6fkr:2Y (3.2) BS01 rna ? GO:0003723 ... Q5SHP9 29526712
    209 6fkr:2Y (3.2) BS02 MG ? GO:0003723 ... Q5SHP9 29526712
    210 6fkr:2Y (3.2) BS03 ZN ? GO:0003723 ... Q5SHP9 29526712
    211 6fkr:2Z (3.2) BS01 rna ? GO:0003723 ... Q5SHZ1 29526712
    212 6fkr:2Z (3.2) BS02 rna ? GO:0003723 ... Q5SHZ1 29526712
    213 6fkr:2b (3.2) BS01 rna ? GO:0003735 ... P80371 29526712
    214 6fkr:2b (3.2) BS02 MG ? GO:0003735 ... P80371 29526712
    215 6fkr:2c (3.2) BS01 rna ? GO:0003676 ... P80372 29526712
    216 6fkr:2d (3.2) BS01 rna ? GO:0003723 ... P80373 29526712
    217 6fkr:2d (3.2) BS02 SF4 ? GO:0003723 ... P80373 29526712
    218 6fkr:2d (3.2) BS03 MG ? GO:0003723 ... P80373 29526712
    219 6fkr:2e (3.2) BS01 rna ? GO:0003723 ... Q5SHQ5 29526712
    220 6fkr:2f (3.2) BS01 rna ? GO:0003735 ... Q5SLP8 29526712
    221 6fkr:2f (3.2) BS02 MG ? GO:0003735 ... Q5SLP8 29526712
    222 6fkr:2g (3.2) BS01 rna ? GO:0000028 ... P17291 29526712
    223 6fkr:2h (3.2) BS01 rna ? GO:0003735 ... P0DOY9 29526712
    224 6fkr:2i (3.2) BS01 rna ? GO:0000049 ... P80374 29526712
    225 6fkr:2j (3.2) BS01 rna ? GO:0000049 ... Q5SHN7 29526712
    226 6fkr:2k (3.2) BS01 rna ? GO:0003735 ... P80376 29526712
    227 6fkr:2k (3.2) BS02 MG ? GO:0003735 ... P80376 29526712
    228 6fkr:2l (3.2) BS01 rna ? GO:0000049 ... Q5SHN3 29526712
    229 6fkr:2l (3.2) BS02 MG ? GO:0000049 ... Q5SHN3 29526712
    230 6fkr:2m (3.2) BS01 rna ? GO:0000049 ... P80377 29526712
    231 6fkr:2m (3.2) BS02 MG ? GO:0000049 ... P80377 29526712
    232 6fkr:2n (3.2) BS01 rna ? GO:0003735 ... P0DOY6 29526712
    233 6fkr:2n (3.2) BS02 ZN ? GO:0003735 ... P0DOY6 29526712
    234 6fkr:2o (3.2) BS01 rna ? GO:0003735 ... Q5SJ76 29526712
    235 6fkr:2o (3.2) BS02 rna ? GO:0003735 ... Q5SJ76 29526712
    236 6fkr:2p (3.2) BS01 rna ? GO:0003735 ... Q5SJH3 29526712
    237 6fkr:2q (3.2) BS01 rna ? GO:0003735 ... P0DOY7 29526712
    238 6fkr:2r (3.2) BS01 rna ? GO:0003735 ... Q5SLQ0 29526712
    239 6fkr:2s (3.2) BS01 rna ? GO:0003723 ... Q5SHP2 29526712
    240 6fkr:2t (3.2) BS01 rna ? GO:0003723 ... P80380 29526712
    241 6fkr:2z (3.2) BS01 rna ? GO:0044238 ... P0AD49 29526712
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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