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BioLiP
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6eml:B (3.6) BS01 rna ? GO:0000028 ... P26783 29155690
    2 6eml:C (3.6) BS01 rna ? GO:0000028 ... P02407 29155690
    3 6eml:D (3.6) BS01 rna ? GO:0000028 ... P48589 29155690
    4 6eml:E (3.6) BS01 rna ? GO:0000028 ... Q01855 29155690
    5 6eml:F (3.6) BS01 rna ? GO:0000462 ... P0CX51 29155690
    6 6eml:H (3.6) BS01 rna ? GO:0000054 ... P0CX55 29155690
    7 6eml:I (3.6) BS01 rna ? GO:0000028 ... P07280 29155690
    8 6eml:K (3.6) BS01 rna ? GO:0002181 ... Q3E792 29155690
    9 6eml:L (3.6) BS01 rna ? GO:0000028 ... P0C0X0 29155690
    10 6eml:N (3.6) BS01 rna ? GO:0000028 ... P05759 29155690
    11 6eml:P (3.6) BS01 rna ? GO:0000028 ... P32905 29155690
    12 6eml:Q (3.6) BS01 rna ? GO:0000462 ... P33442 29155690
    13 6eml:R (3.6) BS01 rna ? GO:0000054 ... P25443 29155690
    14 6eml:S (3.6) BS01 rna ? GO:0002181 ... P0CX35 29155690
    15 6eml:T (3.6) BS01 rna ? GO:0000462 ... P0CX37 29155690
    16 6eml:U (3.6) BS01 rna ? GO:0002181 ... P26786 29155690
    17 6eml:V (3.6) BS01 rna ? GO:0000462 ... P0CX39 29155690
    18 6eml:W (3.6) BS01 rna ? GO:0000462 ... O13516 29155690
    19 6eml:X (3.6) BS01 rna ? GO:0000028 ... P0CX47 29155690
    20 6eml:Y (3.6) BS01 rna ? GO:0000462 ... P05756 29155690
    21 6eml:Z (3.6) BS01 rna ? GO:0000028 ... P06367 29155690
    22 6eml:a (3.6) BS01 rna ? GO:0000447 ... P0C0V8 29155690
    23 6eml:b (3.6) BS01 rna ? GO:0002181 ... P0C0W1 29155690
    24 6eml:c (3.6) BS01 rna ? GO:0000462 ... P0CX29 29155690
    25 6eml:d (3.6) BS01 rna ? GO:0000462 ... P0CX31 29155690
    26 6eml:e (3.6) BS01 rna ? GO:0000447 ... P38333 29155690
    27 6eml:f (3.6) BS01 rna ? GO:0000028 ... P35997 29155690
    28 6eml:g (3.6) BS01 rna ? GO:0002181 ... P0CX33 29155690
    29 6eml:p (3.6) BS01 rna ? GO:0000056 ... Q99216 29155690
    30 6eml:r (3.6) BS01 rna 2.7.11.1 GO:0000462 ... P40160 29155690
    31 6eml:t (3.6) BS01 rna ? GO:0000461 ... Q07381 29155690
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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