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BioLiP
Download all results in tab-seperated text for 22 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6dzk:B (3.6) BS01 rna ? N/A A0QR10 30038002
    2 6dzk:C (3.6) BS01 rna ? GO:0003676 ... A0QSD7 30038002
    3 6dzk:D (3.6) BS01 rna ? GO:0003723 ... A0QSL7 30038002
    4 6dzk:E (3.6) BS01 rna ? GO:0003723 ... A0QSG6 30038002
    5 6dzk:F (3.6) BS01 rna N/A GO:0003735 ... N/A 30038002
    6 6dzk:G (3.6) BS01 rna ? GO:0000028 ... A0QS97 30038002
    7 6dzk:H (3.6) BS01 rna ? GO:0003735 ... A0QSG3 30038002
    8 6dzk:I (3.6) BS01 rna ? GO:0003723 ... A0QSP9 30038002
    9 6dzk:J (3.6) BS01 rna ? GO:0000049 ... A0QSD0 30038002
    10 6dzk:K (3.6) BS01 rna ? GO:0003735 ... A0QSL6 30038002
    11 6dzk:L (3.6) BS01 rna ? GO:0000049 ... A0QS96 30038002
    12 6dzk:M (3.6) BS01 rna ? GO:0000049 ... A0QSL5 30038002
    13 6dzk:N (3.6) BS01 rna ? GO:0003735 ... A0R550 30038002
    14 6dzk:O (3.6) BS01 rna ? GO:0003735 ... A0QVQ3 30038002
    15 6dzk:P (3.6) BS01 rna ? GO:0003735 ... A0QV37 30038002
    16 6dzk:Q (3.6) BS01 rna ? GO:0003735 ... A0QSE0 30038002
    17 6dzk:S (3.6) BS01 rna ? GO:0000028 ... A0QSD5 30038002
    18 6dzk:S (3.6) BS02 peptide ? GO:0000028 ... A0QSD5 30038002
    19 6dzk:T (3.6) BS01 rna ? GO:0003723 ... A0R102 30038002
    20 6dzk:V (3.6) BS01 rna ? GO:0003735 ... A0QVB8 30038002
    21 6dzk:Y (3.6) BS01 rna ? GO:0005737 ... A0QTK6 30038002
    22 6dzk:r (3.6) BS01 rna ? GO:0003735 ... A0R549 30038002
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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