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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2780 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2601 5y6p:t3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2602 5y6p:t3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2603 5y6p:t3 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    2604 5y6p:t3 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2605 5y6p:t4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2606 5y6p:t4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2607 5y6p:t4 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    2608 5y6p:t5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2609 5y6p:t5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2610 5y6p:t5 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    2611 5y6p:t6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2612 5y6p:t6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2613 5y6p:t6 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    2614 5y6p:t7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2615 5y6p:t7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2616 5y6p:t7 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    2617 5y6p:t7 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2618 5y6p:t8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2619 5y6p:t8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2620 5y6p:t8 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    2621 5y6p:t9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2622 5y6p:t9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2623 5y6p:t9 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    2624 5y6p:t9 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2625 5y6p:u2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2626 5y6p:u2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2627 5y6p:u2 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2628 5y6p:u2 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2629 5y6p:u2 (3.5) BS05 PEB N/A GO:0015979 ... N/A 29045394
    2630 5y6p:u3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2631 5y6p:u3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2632 5y6p:u3 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2633 5y6p:u4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2634 5y6p:u4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2635 5y6p:u5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2636 5y6p:u5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2637 5y6p:u6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2638 5y6p:u6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2639 5y6p:u6 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    2640 5y6p:u7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2641 5y6p:u7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2642 5y6p:u8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2643 5y6p:u8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2644 5y6p:u8 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2645 5y6p:u9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2646 5y6p:u9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2647 5y6p:v2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2648 5y6p:v2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2649 5y6p:v2 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    2650 5y6p:v3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2651 5y6p:v3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2652 5y6p:v3 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2653 5y6p:v3 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    2654 5y6p:v4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2655 5y6p:v4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2656 5y6p:v4 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    2657 5y6p:v5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2658 5y6p:v5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2659 5y6p:v5 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    2660 5y6p:v6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2661 5y6p:v6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2662 5y6p:v6 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2663 5y6p:v6 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    2664 5y6p:v7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2665 5y6p:v7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2666 5y6p:v7 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2667 5y6p:v7 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    2668 5y6p:v8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2669 5y6p:v8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2670 5y6p:v8 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2671 5y6p:v8 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2672 5y6p:v9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2673 5y6p:v9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2674 5y6p:v9 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    2675 5y6p:v9 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2676 5y6p:w2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2677 5y6p:w2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2678 5y6p:w2 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2679 5y6p:w2 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2680 5y6p:w3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2681 5y6p:w3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2682 5y6p:w4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2683 5y6p:w4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2684 5y6p:w4 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2685 5y6p:w4 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2686 5y6p:w5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2687 5y6p:w5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2688 5y6p:w5 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2689 5y6p:w5 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2690 5y6p:w6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2691 5y6p:w6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2692 5y6p:w7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2693 5y6p:w7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2694 5y6p:w8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2695 5y6p:w8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2696 5y6p:w8 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    2697 5y6p:w8 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2698 5y6p:w9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2699 5y6p:w9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2700 5y6p:x2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2701 5y6p:x2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2702 5y6p:x2 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    2703 5y6p:x2 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2704 5y6p:x3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2705 5y6p:x3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2706 5y6p:x3 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    2707 5y6p:x3 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2708 5y6p:x4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2709 5y6p:x4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2710 5y6p:x4 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    2711 5y6p:x5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2712 5y6p:x5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2713 5y6p:x5 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    2714 5y6p:x6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2715 5y6p:x6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2716 5y6p:x6 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2717 5y6p:x6 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    2718 5y6p:x7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2719 5y6p:x7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2720 5y6p:x7 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2721 5y6p:x7 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    2722 5y6p:x8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2723 5y6p:x8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2724 5y6p:x9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2725 5y6p:x9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2726 5y6p:x9 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    2727 5y6p:y2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2728 5y6p:y2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2729 5y6p:y2 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2730 5y6p:y2 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    2731 5y6p:y3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2732 5y6p:y3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2733 5y6p:y4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2734 5y6p:y4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2735 5y6p:y5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2736 5y6p:y5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2737 5y6p:y6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2738 5y6p:y6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2739 5y6p:y6 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2740 5y6p:y6 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    2741 5y6p:y7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2742 5y6p:y7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2743 5y6p:y7 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2744 5y6p:y7 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    2745 5y6p:y8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2746 5y6p:y8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2747 5y6p:y8 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    2748 5y6p:y8 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2749 5y6p:y9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2750 5y6p:y9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2751 5y6p:y9 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2752 5y6p:z2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2753 5y6p:z2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2754 5y6p:z2 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2755 5y6p:z2 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    2756 5y6p:z3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2757 5y6p:z3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2758 5y6p:z3 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    2759 5y6p:z3 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    2760 5y6p:z4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2761 5y6p:z4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2762 5y6p:z4 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    2763 5y6p:z5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2764 5y6p:z5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2765 5y6p:z5 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    2766 5y6p:z6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2767 5y6p:z6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2768 5y6p:z6 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2769 5y6p:z6 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    2770 5y6p:z7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2771 5y6p:z7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2772 5y6p:z7 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2773 5y6p:z7 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    2774 5y6p:z8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2775 5y6p:z8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2776 5y6p:z8 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2777 5y6p:z9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    2778 5y6p:z9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    2779 5y6p:z9 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    2780 5y6p:z9 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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